Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | Q7W82_RS17995 | Genome accession | NZ_CP131914 |
| Coordinates | 4177941..4178333 (-) | Length | 130 a.a. |
| NCBI ID | WP_017910395.1 | Uniprot ID | - |
| Organism | Xanthomonas indica strain PPL560 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4172558..4192684 | 4177941..4178333 | within | 0 |
Gene organization within MGE regions
Location: 4172558..4192684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q7W82_RS17970 (Q7W82_17945) | - | 4172558..4173346 (+) | 789 | WP_242161021.1 | class I SAM-dependent methyltransferase | - |
| Q7W82_RS17975 (Q7W82_17950) | - | 4173343..4174293 (+) | 951 | WP_242161020.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| Q7W82_RS17980 (Q7W82_17955) | - | 4174290..4175495 (+) | 1206 | WP_353949498.1 | glycosyltransferase | - |
| Q7W82_RS17985 (Q7W82_17960) | - | 4175545..4177290 (-) | 1746 | WP_353949499.1 | hypothetical protein | - |
| Q7W82_RS17990 (Q7W82_17965) | - | 4177409..4177855 (-) | 447 | WP_311195437.1 | pilin | - |
| Q7W82_RS17995 (Q7W82_17970) | pilA/pilAI | 4177941..4178333 (-) | 393 | WP_017910395.1 | pilin | Machinery gene |
| Q7W82_RS18000 (Q7W82_17975) | pilC | 4178698..4179957 (+) | 1260 | WP_242161061.1 | type II secretion system F family protein | Machinery gene |
| Q7W82_RS18005 (Q7W82_17980) | - | 4179964..4180827 (+) | 864 | WP_010342233.1 | A24 family peptidase | - |
| Q7W82_RS18010 (Q7W82_17985) | coaE | 4180841..4181464 (+) | 624 | WP_242161017.1 | dephospho-CoA kinase | - |
| Q7W82_RS18015 (Q7W82_17990) | - | 4181576..4182910 (-) | 1335 | WP_242161016.1 | HAMP domain-containing sensor histidine kinase | - |
| Q7W82_RS18020 (Q7W82_17995) | - | 4182903..4183580 (-) | 678 | WP_010340533.1 | response regulator transcription factor | - |
| Q7W82_RS18025 (Q7W82_18000) | - | 4183595..4184041 (-) | 447 | WP_242161015.1 | hypothetical protein | - |
| Q7W82_RS18030 (Q7W82_18005) | rimK | 4184301..4185194 (-) | 894 | WP_242161014.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| Q7W82_RS18035 (Q7W82_18010) | - | 4185479..4187788 (+) | 2310 | WP_242161013.1 | TonB-dependent receptor | - |
| Q7W82_RS18040 (Q7W82_18015) | - | 4188050..4190074 (-) | 2025 | WP_242161012.1 | phosphocholine-specific phospholipase C | - |
| Q7W82_RS18045 (Q7W82_18020) | - | 4190341..4190961 (+) | 621 | WP_242161011.1 | histidine phosphatase family protein | - |
| Q7W82_RS18050 (Q7W82_18025) | - | 4191027..4191650 (-) | 624 | WP_242080567.1 | NAD(P)H-dependent oxidoreductase | - |
| Q7W82_RS18055 (Q7W82_18030) | - | 4191725..4192684 (+) | 960 | WP_353949500.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13476.66 Da Isoelectric Point: 9.5775
>NTDB_id=866129 Q7W82_RS17995 WP_017910395.1 4177941..4178333(-) (pilA/pilAI) [Xanthomonas indica strain PPL560]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQFEVKKNEGSTLSTPAQIGLASSTTRCSI
AVTDTTIACTLKGNAAKIAGKNVTLTRTASTGTWACSSSVDAKYKPTGCS
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQFEVKKNEGSTLSTPAQIGLASSTTRCSI
AVTDTTIACTLKGNAAKIAGKNVTLTRTASTGTWACSSSVDAKYKPTGCS
Nucleotide
Download Length: 393 bp
>NTDB_id=866129 Q7W82_RS17995 WP_017910395.1 4177941..4178333(-) (pilA/pilAI) [Xanthomonas indica strain PPL560]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTCGCCAAGTCGCAGGCCACCGCCGGTCTGGCGGAAATCACCCCGGGCAAGACCCAGTTCG
AGGTGAAGAAGAACGAGGGCAGCACCCTCAGCACGCCGGCTCAGATCGGTTTGGCCTCGAGCACGACCCGTTGCAGCATC
GCTGTGACCGATACCACGATTGCCTGTACTCTGAAGGGCAATGCGGCCAAGATCGCTGGCAAGAACGTTACTCTGACCCG
TACTGCCAGCACCGGTACCTGGGCTTGCAGCTCGTCGGTCGACGCCAAGTACAAGCCGACCGGCTGCAGCTGA
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTATGTCGCCAAGTCGCAGGCCACCGCCGGTCTGGCGGAAATCACCCCGGGCAAGACCCAGTTCG
AGGTGAAGAAGAACGAGGGCAGCACCCTCAGCACGCCGGCTCAGATCGGTTTGGCCTCGAGCACGACCCGTTGCAGCATC
GCTGTGACCGATACCACGATTGCCTGTACTCTGAAGGGCAATGCGGCCAAGATCGCTGGCAAGAACGTTACTCTGACCCG
TACTGCCAGCACCGGTACCTGGGCTTGCAGCTCGTCGGTCGACGCCAAGTACAAGCCGACCGGCTGCAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
57.778 |
100 |
0.6 |
| pilA | Acinetobacter baumannii strain A118 |
48.921 |
100 |
0.523 |
| pilA | Pseudomonas aeruginosa PAK |
44.295 |
100 |
0.508 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.12 |
100 |
0.492 |
| pilA | Vibrio cholerae C6706 |
42.759 |
100 |
0.477 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.759 |
100 |
0.477 |
| pilA | Vibrio cholerae strain A1552 |
42.759 |
100 |
0.477 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
100 |
0.438 |
| pilA2 | Legionella pneumophila str. Paris |
38.095 |
100 |
0.431 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.913 |
100 |
0.423 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.742 |
95.385 |
0.408 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
35.417 |
100 |
0.392 |