Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q7W82_RS18000 Genome accession   NZ_CP131914
Coordinates   4178698..4179957 (+) Length   419 a.a.
NCBI ID   WP_242161061.1    Uniprot ID   A0AAU8IC83
Organism   Xanthomonas indica strain PPL560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4172558..4192684 4178698..4179957 within 0


Gene organization within MGE regions


Location: 4172558..4192684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W82_RS17970 (Q7W82_17945) - 4172558..4173346 (+) 789 WP_242161021.1 class I SAM-dependent methyltransferase -
  Q7W82_RS17975 (Q7W82_17950) - 4173343..4174293 (+) 951 WP_242161020.1 lysylphosphatidylglycerol synthase domain-containing protein -
  Q7W82_RS17980 (Q7W82_17955) - 4174290..4175495 (+) 1206 WP_353949498.1 glycosyltransferase -
  Q7W82_RS17985 (Q7W82_17960) - 4175545..4177290 (-) 1746 WP_353949499.1 hypothetical protein -
  Q7W82_RS17990 (Q7W82_17965) - 4177409..4177855 (-) 447 WP_311195437.1 pilin -
  Q7W82_RS17995 (Q7W82_17970) pilA/pilAI 4177941..4178333 (-) 393 WP_017910395.1 pilin Machinery gene
  Q7W82_RS18000 (Q7W82_17975) pilC 4178698..4179957 (+) 1260 WP_242161061.1 type II secretion system F family protein Machinery gene
  Q7W82_RS18005 (Q7W82_17980) - 4179964..4180827 (+) 864 WP_010342233.1 A24 family peptidase -
  Q7W82_RS18010 (Q7W82_17985) coaE 4180841..4181464 (+) 624 WP_242161017.1 dephospho-CoA kinase -
  Q7W82_RS18015 (Q7W82_17990) - 4181576..4182910 (-) 1335 WP_242161016.1 HAMP domain-containing sensor histidine kinase -
  Q7W82_RS18020 (Q7W82_17995) - 4182903..4183580 (-) 678 WP_010340533.1 response regulator transcription factor -
  Q7W82_RS18025 (Q7W82_18000) - 4183595..4184041 (-) 447 WP_242161015.1 hypothetical protein -
  Q7W82_RS18030 (Q7W82_18005) rimK 4184301..4185194 (-) 894 WP_242161014.1 30S ribosomal protein S6--L-glutamate ligase -
  Q7W82_RS18035 (Q7W82_18010) - 4185479..4187788 (+) 2310 WP_242161013.1 TonB-dependent receptor -
  Q7W82_RS18040 (Q7W82_18015) - 4188050..4190074 (-) 2025 WP_242161012.1 phosphocholine-specific phospholipase C -
  Q7W82_RS18045 (Q7W82_18020) - 4190341..4190961 (+) 621 WP_242161011.1 histidine phosphatase family protein -
  Q7W82_RS18050 (Q7W82_18025) - 4191027..4191650 (-) 624 WP_242080567.1 NAD(P)H-dependent oxidoreductase -
  Q7W82_RS18055 (Q7W82_18030) - 4191725..4192684 (+) 960 WP_353949500.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45832.26 Da        Isoelectric Point: 10.1706

>NTDB_id=866130 Q7W82_RS18000 WP_242161061.1 4178698..4179957(+) (pilC) [Xanthomonas indica strain PPL560]
MSATRSAVKKEPVARNTSQQLPFVWEGTDKRGIKMKGEQIAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWM
LLLLLIGTIGGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=866130 Q7W82_RS18000 WP_242161061.1 4178698..4179957(+) (pilC) [Xanthomonas indica strain PPL560]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCAATACCAGCCAACAGTTGCCCTTCGTCTGGGAGGG
CACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGATCGCCAAGAACGCCAATCTGTTGCGCGCAGAACTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAACCCAAACCCAAGCCGCTGTTCGGCGCGGCGGGCAAAAAGATCACCCCGAAGGAC
ATCGCCTTCTTCAGTCGCCAAATGGCGACGATGATGAAGTCAGGCGTCCCGATCGTGGGTTCGCTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGACCAGATCCGCACCGACATCGAGGGCGGCTCCTCGCTCTACGAGG
CGGTCAGCAAGCATCCGGTGCAGTTCGACGAGCTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTCGAG
ACGGTGCTGGAGACGGTTGCGACTTATAAGGAGAACATCGAGGCACTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTAATGGCGGTTGCCCTGATCGTTACCTCGATCCTGCTGGTCTGGGTCGTCCCGCAATTTGAAGACGTGTTCA
AGGGCTTCGGCGCGGAACTGCCAGCCTTCACCCAGATGATCGTCGCGGCATCGCGCTTCATGGTGTCGTATTGGTGGATG
CTGTTGCTCCTGCTGATCGGCACCATCGGCGGCTTCATCTTCGCCTACAAACGTTCGCCTGCGATGCAGCATGGGATGGA
CCGATTGGTGCTCAAGGTGCCGATTATCGGCCAGATCATGCACAACAGCTCGGTGGCGCGTTTCTCGCGCACTCTTGCAG
TCACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCACTGGACATCGTCGCTGGCGCCACCGGCAACAGCGTCTACGAAACT
GCCGTGCTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCAGTCAACGTGGCGATGAAGCAGACAAATCTGTTCCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCCTTGAGCAGCCTGATCGAGCCCTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

52.206

97.375

0.508
  pilC Legionella pneumophila strain ERS1305867

52.475

96.42

0.506
  pilC Acinetobacter baumannii D1279779

51.716

97.375

0.504
  pilG Neisseria gonorrhoeae MS11

44.25

95.465

0.422
  pilG Neisseria meningitidis 44/76-A

43.75

95.465

0.418
  pilC Vibrio cholerae strain A1552

42.469

96.659

0.41
  pilC Vibrio campbellii strain DS40M4

40.452

94.988

0.384