Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   Q6386_RS08435 Genome accession   NZ_CP130891
Coordinates   1606425..1607555 (-) Length   376 a.a.
NCBI ID   WP_003704392.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601425..1612555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS08395 (Q6386_08395) - 1601738..1602379 (-) 642 Protein_1608 IS1595 family transposase -
  Q6386_RS08400 (Q6386_08400) - 1602548..1602868 (-) 321 WP_003690805.1 DUF2322 family protein -
  Q6386_RS08405 (Q6386_08405) upp 1602891..1603517 (-) 627 WP_003687763.1 uracil phosphoribosyltransferase -
  Q6386_RS08410 (Q6386_08410) grxD 1603623..1603934 (-) 312 WP_003687762.1 Grx4 family monothiol glutaredoxin -
  Q6386_RS08415 (Q6386_08415) - 1604035..1604250 (-) 216 WP_003690799.1 DUF333 domain-containing protein -
  Q6386_RS08420 (Q6386_08420) - 1604276..1605055 (-) 780 WP_003694907.1 TatD family hydrolase -
  Q6386_RS08425 (Q6386_08425) - 1605060..1605410 (-) 351 WP_003687757.1 PilZ domain-containing protein -
  Q6386_RS08430 (Q6386_08430) - 1605414..1606391 (-) 978 WP_003696824.1 DNA polymerase III subunit delta' -
  Q6386_RS08435 (Q6386_08435) pilU 1606425..1607555 (-) 1131 WP_003704392.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Q6386_RS08440 (Q6386_08440) - 1607723..1608424 (+) 702 WP_003692750.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  Q6386_RS08445 (Q6386_08445) lepA 1608566..1610359 (+) 1794 WP_003687751.1 translation elongation factor 4 -
  Q6386_RS08450 (Q6386_08450) lepB 1610505..1611524 (+) 1020 WP_050164849.1 signal peptidase I -
  Q6386_RS08455 (Q6386_08455) - 1611629..1611736 (-) 108 Protein_1620 IS5/IS1182 family transposase -
  Q6386_RS08460 (Q6386_08460) - 1611960..1612109 (-) 150 WP_003687747.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42215.32 Da        Isoelectric Point: 6.2891

>NTDB_id=861703 Q6386_RS08435 WP_003704392.1 1606425..1607555(-) (pilU) [Neisseria gonorrhoeae strain NJ208430]
MFTDENMTAKEELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKITRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECN
FAISLPDTSRFRVNAMIQRGATALVFRAITSKIPKFESLNLPPALKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLHA
NSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQRLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKST
TLGMQTFDQHLYQLYEKGEISLQDALKNADSAHDLRLAVQLRSRRAQSSDPDLELL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=861703 Q6386_RS08435 WP_003704392.1 1606425..1607555(-) (pilU) [Neisseria gonorrhoeae strain NJ208430]
ATGTTTACCGATGAAAATATGACTGCAAAGGAAGAACTGTTCGCATGGCTGCGCCATATGAACAAAAACAAAGGTTCCGA
CCTGTTTGTGACGACCCATTTCCCGCCCGCTATGAAGCTGGACGGCAAAATCACCCGCATCACGGACGAACCGCTGACGG
CGGAAAAATGTATGGAAATCGCCTTTTCGATTATGAGTGCGAAGCAGGCGGAAGAATTTTCATCGACCAACGAGTGCAAC
TTCGCCATCAGCCTGCCGGACACCAGCCGCTTCCGCGTCAATGCGATGATACAGCGCGGTGCGACGGCGTTGGTATTCCG
CGCGATTACCAGCAAGATTCCCAAGTTTGAAAGCCTGAACCTGCCGCCGGCCTTGAAGGATGTTGCGCTGAAAAAACGCG
GGCTGGTTATTTTTGTCGGCGGCACCGGCTCGGGCAAATCGACTTCGCTCGCCTCGCTTATCGACTACCGCAATGAAAAT
TCGTTCGGACACATCATCACCATCGAAGATCCGATCGAGTTTGTCCACGAACACAAAAACTGCATCATTACCCAGCGCGA
GGTCGGCGTGGACACGGAAAACTGGATGGCGGCGTTGAAAAATACGCTGCGTCAGGCGCCGGATGTGATCCTTATCGGCG
AAATCCGCGACCGTGAAACAATGGACTACGCCATCGCCTTTGCCGAAACGGGGCATTTGTGTATGGCGACGCTGCACGCC
AACAGCACCAATCAGGCGCTCGACCGCATCATCAACTTCTTCCCCGAGGAGCGGCGCGAACAATTGCTGACGGATTTGTC
GCTCAACCTTCAGGCGTTTATTTCGCAACGCCTCGTTCCGCGAGACGGCGGCAAGGGCAGGGTGGCGGCAGTCGAGGTGC
TGCTCAATTCGCCCCTGATTTCGGAGTTGATTCACAACGGCAACATCCATGAAATCAAAGAAGTGATGAAAAAATCCACT
ACCCTGGGTATGCAGACCTTCGACCAACACCTTTACCAATTGTATGAAAAAGGCGAGATTTCCTTGCAGGATGCCTTGAA
AAATGCCGATTCCGCACATGATTTGCGTTTGGCGGTACAGTTGCGCAGCCGCAGGGCACAAAGTTCCGACCCCGATTTGG
AACTGCTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(87-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.659

93.617

0.559
  pilU Acinetobacter baylyi ADP1

57.726

91.223

0.527
  pilU Vibrio cholerae strain A1552

54.366

94.415

0.513
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.343

93.883

0.407
  pilT Legionella pneumophila strain Lp02

43.827

86.17

0.378
  pilT Legionella pneumophila strain ERS1305867

43.827

86.17

0.378
  pilT Acinetobacter baylyi ADP1

42.727

87.766

0.375
  pilT Pseudomonas aeruginosa PAK

42.378

87.234

0.37
  pilT Acinetobacter nosocomialis M2

42.901

86.17

0.37
  pilT Acinetobacter baumannii D1279779

42.901

86.17

0.37
  pilT Acinetobacter baumannii strain A118

42.901

86.17

0.37
  pilT Neisseria meningitidis 8013

40.896

89.096

0.364
  pilT Pseudomonas stutzeri DSM 10701

41.463

87.234

0.362