Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | Q5H80_RS11530 | Genome accession | NZ_CP130748 |
| Coordinates | 2650474..2650899 (+) | Length | 141 a.a. |
| NCBI ID | WP_304564834.1 | Uniprot ID | - |
| Organism | Vibrio sp. SNU_ST1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2645474..2655899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5H80_RS11515 (Q5H80_11515) | pdhR | 2647402..2648163 (-) | 762 | WP_304564832.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| Q5H80_RS11520 (Q5H80_11520) | ampD | 2648645..2649245 (-) | 601 | Protein_2218 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| Q5H80_RS11525 (Q5H80_11525) | nadC | 2649329..2650219 (+) | 891 | WP_139685627.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| Q5H80_RS11530 (Q5H80_11530) | pilA | 2650474..2650899 (+) | 426 | WP_304564834.1 | pilin | Machinery gene |
| Q5H80_RS11535 (Q5H80_11535) | pilB | 2650900..2652585 (+) | 1686 | WP_304564835.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Q5H80_RS11540 (Q5H80_11540) | pilC | 2652601..2653827 (+) | 1227 | WP_304564836.1 | type II secretion system F family protein | Machinery gene |
| Q5H80_RS11545 (Q5H80_11545) | pilD | 2653896..2654765 (+) | 870 | WP_304564837.1 | A24 family peptidase | Machinery gene |
| Q5H80_RS11550 (Q5H80_11550) | coaE | 2654768..2655382 (+) | 615 | WP_304564838.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14398.44 Da Isoelectric Point: 4.9220
>NTDB_id=861300 Q5H80_RS11530 WP_304564834.1 2650474..2650899(+) (pilA) [Vibrio sp. SNU_ST1]
MKNKSKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEVSSGLATVKSLITPAELFYQENGIAAAATLAQLGID
GAANDLGAITSALNAGGNPTVVFTFDASSSINTGIVTFTRDAATGWTCAPTAPAIAIDGCS
MKNKSKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEVSSGLATVKSLITPAELFYQENGIAAAATLAQLGID
GAANDLGAITSALNAGGNPTVVFTFDASSSINTGIVTFTRDAATGWTCAPTAPAIAIDGCS
Nucleotide
Download Length: 426 bp
>NTDB_id=861300 Q5H80_RS11530 WP_304564834.1 2650474..2650899(+) (pilA) [Vibrio sp. SNU_ST1]
ATGAAAAATAAAAGTAAAAGAACAAACCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTTGCGATTATTGGTGT
GCTGTCTGCTATTGCTGTACCTGCATATCAAAACTATGTTACTCGCTCTGAGGTATCCTCTGGGTTAGCAACGGTCAAAT
CATTAATCACTCCTGCAGAATTGTTTTATCAAGAAAATGGCATTGCTGCCGCTGCGACATTAGCTCAATTAGGAATTGAT
GGTGCAGCCAATGACTTAGGAGCTATAACATCAGCTCTAAACGCTGGCGGTAACCCAACAGTGGTGTTTACATTCGATGC
GAGTAGCTCAATTAACACTGGAATAGTTACATTTACTCGTGATGCTGCAACAGGGTGGACTTGTGCTCCAACAGCACCTG
CAATTGCTATTGATGGCTGTTCATAA
ATGAAAAATAAAAGTAAAAGAACAAACCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTTGCGATTATTGGTGT
GCTGTCTGCTATTGCTGTACCTGCATATCAAAACTATGTTACTCGCTCTGAGGTATCCTCTGGGTTAGCAACGGTCAAAT
CATTAATCACTCCTGCAGAATTGTTTTATCAAGAAAATGGCATTGCTGCCGCTGCGACATTAGCTCAATTAGGAATTGAT
GGTGCAGCCAATGACTTAGGAGCTATAACATCAGCTCTAAACGCTGGCGGTAACCCAACAGTGGTGTTTACATTCGATGC
GAGTAGCTCAATTAACACTGGAATAGTTACATTTACTCGTGATGCTGCAACAGGGTGGACTTGTGCTCCAACAGCACCTG
CAATTGCTATTGATGGCTGTTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
81.56 |
100 |
0.816 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.056 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
43.056 |
100 |
0.44 |
| pilA | Vibrio cholerae C6706 |
43.056 |
100 |
0.44 |
| pilA | Pseudomonas aeruginosa PAK |
44.697 |
93.617 |
0.418 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.416 |
97.163 |
0.383 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.324 |
100 |
0.376 |
| pilA | Acinetobacter baumannii strain A118 |
40.945 |
90.071 |
0.369 |
| comF | Acinetobacter baylyi ADP1 |
36.957 |
97.872 |
0.362 |
| pilA2 | Legionella pneumophila str. Paris |
41.463 |
87.234 |
0.362 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.463 |
87.234 |
0.362 |