Detailed information NTG0861303

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q5H80_RS11545
• Genome accession: NZ_CP130748
• Coordinates: 2653896..2654765 (+)
• Length: 289 a.a.
• NCBI ID: WP_304564837.1
• Uniprot ID: -
• Organism: Vibrio sp. SNU_ST1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2648896..2659765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5H80_RS11525 (Q5H80_11525)	nadC	2649329..2650219 (+)	891	WP_139685627.1	carboxylating nicotinate-nucleotide diphosphorylase	-
Q5H80_RS11530 (Q5H80_11530)	pilA	2650474..2650899 (+)	426	WP_304564834.1	pilin	Machinery gene
Q5H80_RS11535 (Q5H80_11535)	pilB	2650900..2652585 (+)	1686	WP_304564835.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q5H80_RS11540 (Q5H80_11540)	pilC	2652601..2653827 (+)	1227	WP_304564836.1	type II secretion system F family protein	Machinery gene
Q5H80_RS11545 (Q5H80_11545)	pilD	2653896..2654765 (+)	870	WP_304564837.1	A24 family peptidase	Machinery gene
Q5H80_RS11550 (Q5H80_11550)	coaE	2654768..2655382 (+)	615	WP_304564838.1	dephospho-CoA kinase	-
Q5H80_RS11555 (Q5H80_11555)	zapD	2655409..2656149 (+)	741	WP_017101235.1	cell division protein ZapD	-
Q5H80_RS11560 (Q5H80_11560)	yacG	2656230..2656427 (+)	198	WP_017101236.1	DNA gyrase inhibitor YacG	-
Q5H80_RS11565 (Q5H80_11565)	rplS	2656874..2657227 (-)	354	WP_009847607.1	50S ribosomal protein L19	-
Q5H80_RS11570 (Q5H80_11570)	trmD	2657287..2658027 (-)	741	WP_009847608.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Q5H80_RS11575 (Q5H80_11575)	rimM	2658054..2658608 (-)	555	WP_009847609.1	ribosome maturation factor RimM	-
Q5H80_RS11580 (Q5H80_11580)	rpsP	2658635..2658883 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32529.74 Da
• Isoelectric Point: 7.6349

>NTDB_id=861303 Q5H80_RS11545 WP_304564837.1 2653896..2654765(+) (pilD) [Vibrio sp. SNU_ST1]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSACPKCKTQLRIV
DNVPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALIAATFIDLDTMMLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDRAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=861303 Q5H80_RS11545 WP_304564837.1 2653896..2654765(+) (pilD) [Vibrio sp. SNU_ST1]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATTGGCAGTTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGGAAGTTCAATCTCAGTATCCCTCGTTCGGCTTGCCCGAAATGTAAAACCCAATTAAGAATCGTC
GACAATGTTCCAGTATTAAGCTGGTTGTTCTTGAAAGGTAAGTGTCATAGCTGTGCTAATCCAATCAGTGCTCGCTATCC
ATTGGTCGAACTGCTGACTGCAATACTATGCACCGTCGTGGCTAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACCTTTGCATTGATTGCCGCAACCTTTATCGACTTGGATACCATGATGTTACCTGATCAAATCACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTAGCACTGTTTAACATCAGCCCTGTATCGCTTCAAGATTCCGTAGTTGGCGCAATGGC
CGGCTACCTAGCTTTGTGGTCGGTTTATTGGTTGTTCAAGCTACTAACAGGCAAAGAAGGCATGGGGTATGGAGATTTCA
AACTCCTAGCGGCATTAGGTGCATGGCTGGGTTGGCAACACCTGCCGATGATCATCCTTTTATCTTCACTTGTCGGCCTT
GTTTTCGGATTAATTCAGCTTCGCCTGAAACAGCAAGGTATAGATAGAGCCTTCCCATTTGGGCCTTATCTTGCGATTGC
AGGTTGGGTAAGTTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	68.056	99.654	0.678
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443