Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q5H80_RS11540 Genome accession   NZ_CP130748
Coordinates   2652601..2653827 (+) Length   408 a.a.
NCBI ID   WP_304564836.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2647601..2658827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS11520 (Q5H80_11520) ampD 2648645..2649245 (-) 601 Protein_2218 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  Q5H80_RS11525 (Q5H80_11525) nadC 2649329..2650219 (+) 891 WP_139685627.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q5H80_RS11530 (Q5H80_11530) pilA 2650474..2650899 (+) 426 WP_304564834.1 pilin Machinery gene
  Q5H80_RS11535 (Q5H80_11535) pilB 2650900..2652585 (+) 1686 WP_304564835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5H80_RS11540 (Q5H80_11540) pilC 2652601..2653827 (+) 1227 WP_304564836.1 type II secretion system F family protein Machinery gene
  Q5H80_RS11545 (Q5H80_11545) pilD 2653896..2654765 (+) 870 WP_304564837.1 A24 family peptidase Machinery gene
  Q5H80_RS11550 (Q5H80_11550) coaE 2654768..2655382 (+) 615 WP_304564838.1 dephospho-CoA kinase -
  Q5H80_RS11555 (Q5H80_11555) zapD 2655409..2656149 (+) 741 WP_017101235.1 cell division protein ZapD -
  Q5H80_RS11560 (Q5H80_11560) yacG 2656230..2656427 (+) 198 WP_017101236.1 DNA gyrase inhibitor YacG -
  Q5H80_RS11565 (Q5H80_11565) rplS 2656874..2657227 (-) 354 WP_009847607.1 50S ribosomal protein L19 -
  Q5H80_RS11570 (Q5H80_11570) trmD 2657287..2658027 (-) 741 WP_009847608.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q5H80_RS11575 (Q5H80_11575) rimM 2658054..2658608 (-) 555 WP_009847609.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45098.08 Da        Isoelectric Point: 10.0589

>NTDB_id=861302 Q5H80_RS11540 WP_304564836.1 2652601..2653827(+) (pilC) [Vibrio sp. SNU_ST1]
MSTKLQSPLKNYHWKGINSSGKKVSGQTLALAELEVREKLKDQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLATM
LATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTASTHFDDLYTDLVATGELSGNLAQVFERLATYRE
KSEQLKSKVIKALIYPTMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLSLSHWVQAYSLYAAVGIGLVTLF
TYQLRQRYYSIRLSFSRLGLRLPILGGVLAKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEAAIIEVHRETAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=861302 Q5H80_RS11540 WP_304564836.1 2652601..2653827(+) (pilC) [Vibrio sp. SNU_ST1]
ATGAGCACTAAACTGCAGTCACCATTAAAAAACTACCACTGGAAAGGCATAAACAGCTCAGGCAAAAAGGTGTCTGGGCA
AACCTTGGCACTCGCCGAATTAGAAGTACGAGAAAAGCTCAAAGATCAGCATATTCAGATTAAGAAAATCAAAAAGAAAA
GTATCTCAGCCGTCACTCGTTTAACACACCGAGTCAAAGCCAAAGACATCACCATTTTGACTCGACAACTTGCGACCATG
CTTGCCACTGGCGTGCCTATCGTTCAGGCCATTAAGCTAGTGTCAGACAATCACCGTAAAGCTGAAATGAAATCAATTCT
ATTGCACATCTGTCGAGGTGTCGAAGCGGGAACCCCTATATCAAAAGCGATGCGGACGGCAAGCACTCACTTTGATGACT
TATACACCGATTTGGTCGCTACTGGCGAGCTTTCCGGAAACCTAGCGCAAGTCTTTGAACGCTTGGCAACCTATAGAGAA
AAGAGTGAGCAGCTAAAATCTAAGGTCATAAAAGCATTGATTTACCCCACAATGGTGGTCGCTGTCGCGCTGACTGTCTC
TTACTTAATGCTCACCATGGTCATTCCTGAATTTGAATCGATGTTTTCAGGCTTCGGGGCAGACCTCCCTTGGTTTACTC
AACAAGTACTCTCCCTTTCGCATTGGGTACAGGCTTACAGTCTTTATGCTGCCGTTGGCATAGGGTTAGTCACATTATTT
ACCTACCAACTGCGTCAACGGTATTATTCCATTCGTTTATCATTCAGCCGTCTAGGGTTAAGACTTCCTATTCTTGGCGG
AGTATTAGCCAAAGCCTCTATCGCCAAATTCAGCCGAACCTTATCAACCAGTTTTAGTTCAGGGATTCCCATTTTAACCA
GCCTGAAGACCACAGCTAAAACAGCAGGTAACCTGCATTATGAAGCGGCCATCATCGAAGTTCACCGTGAAACAGCCGCT
GGCATGCCGATGTATATCGCGATGCGCAATACCGATGCCTTTCCTGAAATGGTTTTACAGATGGTCATGATAGGAGAAGA
GTCCGGTAACCTTGATGACATGCTTAATAAAATCGCATCTATTTATGAATTTGAAGTCGACAACACCGTCGATAATTTAG
GTAAGATTCTAGAGCCACTGATCATCGTATTTTTAGGCACCGCTATTGGTGGGCTTGTTGTCGCGATGTACTTACCGATC
TTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.299

98.284

0.789
  pilC Vibrio campbellii strain DS40M4

74.378

98.529

0.733
  pilC Legionella pneumophila strain ERS1305867

41.872

99.51

0.417
  pilC Acinetobacter baylyi ADP1

40.777

100

0.412
  pilC Acinetobacter baumannii D1279779

40.777

100

0.412
  pilC Pseudomonas stutzeri DSM 10701

40

99.265

0.397
  pilG Neisseria gonorrhoeae MS11

39.85

97.794

0.39
  pilG Neisseria meningitidis 44/76-A

39.599

97.794

0.387