Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6410_RS08320 Genome accession   NZ_AP024276
Coordinates   1656597..1656995 (-) Length   132 a.a.
NCBI ID   WP_105140115.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1628836..1669166 1656597..1656995 within 0


Gene organization within MGE regions


Location: 1628836..1669166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS08165 (SUT286_15880) - 1628836..1629573 (-) 738 WP_237395292.1 PlySs2 family phage lysin -
  L6410_RS08170 (SUT286_15890) - 1629557..1629907 (-) 351 WP_237395293.1 phage holin -
  L6410_RS08175 (SUT286_15900) - 1629910..1630209 (-) 300 WP_029188584.1 hypothetical protein -
  L6410_RS08180 (SUT286_15910) - 1630213..1630368 (-) 156 WP_153308832.1 CD1375 family protein -
  L6410_RS08185 (SUT286_15920) - 1630388..1630822 (-) 435 WP_208583946.1 DUF1366 domain-containing protein -
  L6410_RS08190 (SUT286_15930) - 1630835..1632904 (-) 2070 WP_237395294.1 DUF859 family phage minor structural protein -
  L6410_RS08195 (SUT286_15940) - 1632906..1636400 (-) 3495 WP_237395295.1 phage tail spike protein -
  L6410_RS08200 (SUT286_15950) - 1636404..1637888 (-) 1485 WP_024395586.1 distal tail protein Dit -
  L6410_RS08205 (SUT286_15960) - 1637888..1641262 (-) 3375 WP_237395296.1 tape measure protein -
  L6410_RS08210 (SUT286_15970) - 1641277..1641867 (-) 591 WP_024395588.1 bacteriophage Gp15 family protein -
  L6410_RS08215 (SUT286_15980) - 1641877..1642242 (-) 366 WP_024395589.1 hypothetical protein -
  L6410_RS08220 (SUT286_15990) - 1642300..1642755 (-) 456 WP_237395297.1 phage tail tube protein -
  L6410_RS08225 (SUT286_16000) - 1642759..1643169 (-) 411 WP_237395298.1 minor capsid protein -
  L6410_RS08230 (SUT286_16010) - 1643169..1643510 (-) 342 WP_237395299.1 minor capsid protein -
  L6410_RS08235 (SUT286_16020) - 1643510..1643848 (-) 339 WP_161943510.1 putative minor capsid protein -
  L6410_RS08240 (SUT286_16030) - 1643841..1644221 (-) 381 WP_237395300.1 hypothetical protein -
  L6410_RS08245 (SUT286_16040) - 1644249..1644467 (-) 219 WP_172010653.1 hypothetical protein -
  L6410_RS08250 (SUT286_16050) - 1644477..1645349 (-) 873 WP_105140128.1 capsid protein -
  L6410_RS08255 (SUT286_16060) - 1645363..1645914 (-) 552 WP_237395301.1 phage scaffolding protein -
  L6410_RS08260 (SUT286_16070) - 1646096..1646296 (-) 201 WP_237395302.1 hypothetical protein -
  L6410_RS08265 (SUT286_16080) - 1646382..1646669 (-) 288 WP_237395303.1 hypothetical protein -
  L6410_RS08270 (SUT286_16090) - 1646656..1648326 (-) 1671 WP_237395304.1 phage minor capsid protein -
  L6410_RS08275 (SUT286_16100) - 1648326..1649816 (-) 1491 WP_237396770.1 phage portal protein -
  L6410_RS08280 (SUT286_16110) - 1649888..1651228 (-) 1341 WP_237395305.1 PBSX family phage terminase large subunit -
  L6410_RS08285 (SUT286_16120) terS 1651188..1651838 (-) 651 WP_237395306.1 phage terminase small subunit -
  L6410_RS08290 (SUT286_16130) - 1651988..1652410 (-) 423 WP_105140119.1 DUF1492 domain-containing protein -
  L6410_RS08295 (SUT286_16140) - 1652486..1653334 (-) 849 WP_105140118.1 prohibitin family protein -
  L6410_RS08300 (SUT286_16150) - 1653558..1653866 (-) 309 WP_237395307.1 DUF1372 family protein -
  L6410_RS08305 (SUT286_16160) - 1653863..1654018 (-) 156 WP_237395308.1 DUF7204 family protein -
  L6410_RS08310 (SUT286_16170) - 1654396..1655775 (-) 1380 WP_237395309.1 virulence-associated E family protein -
  L6410_RS08315 (SUT286_16180) - 1655759..1656586 (-) 828 WP_105140116.1 bifunctional DNA primase/polymerase -
  L6410_RS08320 (SUT286_16190) ssbA 1656597..1656995 (-) 399 WP_105140115.1 single-stranded DNA-binding protein Machinery gene
  L6410_RS08325 (SUT286_16200) - 1656992..1657288 (-) 297 WP_105140114.1 hypothetical protein -
  L6410_RS08330 (SUT286_16210) - 1657383..1658081 (-) 699 WP_237395310.1 ERF family protein -
  L6410_RS08335 (SUT286_16220) - 1658091..1658411 (-) 321 WP_237395311.1 hypothetical protein -
  L6410_RS08340 (SUT286_16230) - 1658430..1659602 (-) 1173 WP_237395312.1 DEAD/DEAH box helicase family protein -
  L6410_RS08345 (SUT286_16240) - 1659571..1660035 (-) 465 WP_336381748.1 hypothetical protein -
  L6410_RS08350 (SUT286_16250) - 1660035..1660514 (-) 480 WP_237395314.1 siphovirus Gp157 family protein -
  L6410_RS08355 (SUT286_16260) - 1660498..1661094 (-) 597 WP_237395315.1 HNH endonuclease signature motif containing protein -
  L6410_RS08360 (SUT286_16270) - 1661098..1661322 (-) 225 WP_237395316.1 hypothetical protein -
  L6410_RS08365 (SUT286_16280) - 1661315..1661545 (-) 231 WP_044768155.1 hypothetical protein -
  L6410_RS08370 (SUT286_16290) - 1661538..1661822 (-) 285 WP_105136782.1 hypothetical protein -
  L6410_RS08375 (SUT286_16300) - 1661824..1662135 (-) 312 WP_044770788.1 hypothetical protein -
  L6410_RS08380 (SUT286_16310) - 1662215..1662409 (-) 195 WP_105136755.1 helix-turn-helix domain-containing protein -
  L6410_RS08385 (SUT286_16320) - 1662633..1662800 (+) 168 WP_105128986.1 YjzC family protein -
  L6410_RS08390 (SUT286_16330) - 1662998..1663717 (+) 720 WP_105140106.1 hypothetical protein -
  L6410_RS08395 (SUT286_16340) - 1663710..1663946 (-) 237 WP_237396800.1 hypothetical protein -
  L6410_RS08400 (SUT286_16350) - 1664000..1664206 (-) 207 WP_023371190.1 hypothetical protein -
  L6410_RS08405 (SUT286_16360) - 1664394..1665116 (+) 723 WP_237395317.1 XRE family transcriptional regulator -
  L6410_RS08410 (SUT286_16370) - 1665124..1665933 (+) 810 WP_044669109.1 MazF family toxin-antitoxin system -
  L6410_RS08415 (SUT286_16380) - 1666171..1667313 (+) 1143 WP_237395318.1 tyrosine-type recombinase/integrase -
  L6410_RS08420 (SUT286_16390) - 1667403..1667678 (-) 276 WP_024385016.1 HU family DNA-binding protein -
  L6410_RS08425 (SUT286_16400) - 1667762..1668361 (-) 600 WP_024392463.1 YpmS family protein -
  L6410_RS08430 (SUT286_16410) - 1668330..1669166 (-) 837 WP_024392462.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14966.58 Da        Isoelectric Point: 4.6582

>NTDB_id=84489 L6410_RS08320 WP_105140115.1 1656597..1656995(-) (ssbA) [Streptococcus parasuis strain SUT-286]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNYQDGSFGNSSPMDIQDEDLPF

Nucleotide


Download         Length: 399 bp        

>NTDB_id=84489 L6410_RS08320 WP_105140115.1 1656597..1656995(-) (ssbA) [Streptococcus parasuis strain SUT-286]
ATGATTAACAACGTAGTATTGGTAGGACGCATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCTGTTGC
GACTTTTACCTTGGCTGTCAATCGCAACTTCAAAAACCAAGATGGGGAGCGTGAAGCAGATTTCATCAACTGTGTCATTT
GGCGTCAGCAAGCCGAAAACTTGGCTAACTGGGCTAAAAAGGGTGCTTTGATTGGAATTACAGGTCGCATTCAGACTCGT
AGCTATGACAACCAACAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTGG
ACAACAGTCGAATTATCAAGACGGCTCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.326

100

0.682
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.674
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.485

100

0.485
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.455

100

0.455
  ssbB/cilA Streptococcus pneumoniae Rx1

44.697

100

0.447
  ssbB/cilA Streptococcus mitis NCTC 12261

44.697

100

0.447
  ssbB/cilA Streptococcus pneumoniae D39

44.697

100

0.447
  ssbB/cilA Streptococcus pneumoniae R6

44.697

100

0.447
  ssbB/cilA Streptococcus mitis SK321

44.697

100

0.447
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.128

82.576

0.447
  ssbA Streptococcus mutans UA159

43.939

100

0.439
  ssb Vibrio cholerae strain A1552

29.48

100

0.386
  ssbB Lactococcus lactis subsp. cremoris KW2

47.17

80.303

0.379
  ssb Glaesserella parasuis strain SC1401

27.119

100

0.364

Multiple sequence alignment