Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QQO15_RS10910 Genome accession   NZ_CP127094
Coordinates   2249239..2249676 (-) Length   145 a.a.
NCBI ID   WP_214537933.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 19KM0990     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2217165..2260165 2249239..2249676 within 0


Gene organization within MGE regions


Location: 2217165..2260165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO15_RS10680 (QQO15_10680) clpP 2217165..2217779 (-) 615 WP_256726599.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  QQO15_RS10690 (QQO15_10690) - 2218344..2219099 (-) 756 WP_063282656.1 CHAP domain-containing protein -
  QQO15_RS10695 (QQO15_10695) - 2219112..2219366 (-) 255 WP_063282655.1 phage holin -
  QQO15_RS10700 (QQO15_10700) - 2219385..2221274 (-) 1890 WP_199569645.1 glucosaminidase domain-containing protein -
  QQO15_RS10705 (QQO15_10705) - 2221397..2221771 (-) 375 WP_015728845.1 hypothetical protein -
  QQO15_RS10710 (QQO15_10710) - 2221804..2223075 (-) 1272 WP_037543575.1 phage baseplate upper protein -
  QQO15_RS10715 (QQO15_10715) - 2223092..2224135 (-) 1044 WP_214537944.1 SGNH/GDSL hydrolase family protein -
  QQO15_RS10720 (QQO15_10720) - 2224147..2224839 (-) 693 WP_103866906.1 hypothetical protein -
  QQO15_RS10725 (QQO15_10725) - 2224843..2226240 (-) 1398 WP_110161816.1 phage tail protein -
  QQO15_RS10730 (QQO15_10730) - 2226253..2227185 (-) 933 WP_015728840.1 phage tail family protein -
  QQO15_RS10735 (QQO15_10735) - 2227198..2230317 (-) 3120 WP_285238419.1 phage tail protein -
  QQO15_RS10740 (QQO15_10740) - 2230334..2230684 (-) 351 WP_015728838.1 hypothetical protein -
  QQO15_RS10745 (QQO15_10745) - 2230714..2231094 (-) 381 WP_015728837.1 tail assembly chaperone -
  QQO15_RS10750 (QQO15_10750) - 2231154..2231807 (-) 654 WP_285238420.1 phage major tail protein, TP901-1 family -
  QQO15_RS10755 (QQO15_10755) - 2231825..2232220 (-) 396 WP_015728835.1 hypothetical protein -
  QQO15_RS10760 (QQO15_10760) - 2232232..2232582 (-) 351 WP_285238421.1 HK97-gp10 family putative phage morphogenesis protein -
  QQO15_RS10765 (QQO15_10765) - 2232884..2233216 (-) 333 WP_015728833.1 phage head-tail connector protein -
  QQO15_RS10770 (QQO15_10770) - 2233228..2233677 (-) 450 WP_060830214.1 Ig-like domain-containing protein -
  QQO15_RS10775 (QQO15_10775) - 2233767..2234678 (-) 912 WP_140232575.1 capsid protein -
  QQO15_RS10780 (QQO15_10780) - 2234697..2235305 (-) 609 WP_041614791.1 DUF4355 domain-containing protein -
  QQO15_RS10785 (QQO15_10785) - 2235458..2235652 (-) 195 WP_014613564.1 hypothetical protein -
  QQO15_RS10790 (QQO15_10790) - 2235649..2237001 (-) 1353 WP_140232573.1 minor capsid protein -
  QQO15_RS10795 (QQO15_10795) - 2236994..2238439 (-) 1446 WP_099997379.1 phage portal protein -
  QQO15_RS10800 (QQO15_10800) - 2238451..2239725 (-) 1275 WP_037543597.1 PBSX family phage terminase large subunit -
  QQO15_RS10805 (QQO15_10805) - 2239712..2240155 (-) 444 WP_096536443.1 terminase small subunit -
  QQO15_RS10810 (QQO15_10810) - 2240444..2240869 (-) 426 WP_037543601.1 sigma factor-like helix-turn-helix DNA-binding protein -
  QQO15_RS10815 (QQO15_10815) - 2240870..2241136 (-) 267 WP_041614785.1 hypothetical protein -
  QQO15_RS10820 (QQO15_10820) - 2241133..2241282 (-) 150 WP_015728822.1 DUF1381 domain-containing protein -
  QQO15_RS10825 (QQO15_10825) - 2241279..2241743 (-) 465 WP_101458474.1 class I SAM-dependent methyltransferase -
  QQO15_RS10830 (QQO15_10830) - 2241755..2242195 (-) 441 WP_101485121.1 hypothetical protein -
  QQO15_RS10835 (QQO15_10835) - 2242248..2242778 (-) 531 WP_285238422.1 dUTP pyrophosphatase -
  QQO15_RS10840 (QQO15_10840) - 2242779..2242934 (-) 156 WP_202996953.1 hypothetical protein -
  QQO15_RS10845 (QQO15_10845) - 2242935..2243414 (-) 480 WP_115807088.1 hypothetical protein -
  QQO15_RS10850 (QQO15_10850) - 2243608..2243997 (-) 390 WP_349357134.1 hypothetical protein -
  QQO15_RS10855 (QQO15_10855) - 2243997..2244245 (-) 249 WP_103926868.1 hypothetical protein -
  QQO15_RS10860 (QQO15_10860) - 2244245..2244742 (-) 498 WP_129945892.1 DUF3310 domain-containing protein -
  QQO15_RS10865 (QQO15_10865) - 2244899..2245207 (-) 309 WP_285238424.1 hypothetical protein -
  QQO15_RS10870 (QQO15_10870) - 2245218..2245436 (-) 219 WP_096638649.1 hypothetical protein -
  QQO15_RS10875 (QQO15_10875) - 2245429..2245851 (-) 423 WP_103863100.1 RusA family crossover junction endodeoxyribonuclease -
  QQO15_RS10880 (QQO15_10880) - 2245835..2246056 (-) 222 WP_096533163.1 hypothetical protein -
  QQO15_RS10885 (QQO15_10885) - 2246053..2247297 (-) 1245 WP_214537937.1 DnaB helicase C-terminal domain-containing protein -
  QQO15_RS10890 (QQO15_10890) - 2247290..2247637 (-) 348 WP_214537936.1 hypothetical protein -
  QQO15_RS10895 (QQO15_10895) - 2247642..2248388 (-) 747 WP_214537935.1 DnaD domain protein -
  QQO15_RS10900 (QQO15_10900) - 2248381..2249055 (-) 675 WP_214537934.1 putative HNHc nuclease -
  QQO15_RS10905 (QQO15_10905) - 2249064..2249258 (-) 195 WP_285238425.1 hypothetical protein -
  QQO15_RS10910 (QQO15_10910) ssbA 2249239..2249676 (-) 438 WP_214537933.1 single-stranded DNA-binding protein Machinery gene
  QQO15_RS10915 (QQO15_10915) - 2249676..2250347 (-) 672 WP_214537932.1 ERF family protein -
  QQO15_RS10920 (QQO15_10920) - 2250344..2250829 (-) 486 WP_214537931.1 siphovirus Gp157 family protein -
  QQO15_RS10925 (QQO15_10925) - 2250813..2251037 (-) 225 WP_096666742.1 hypothetical protein -
  QQO15_RS10930 (QQO15_10930) - 2251049..2251309 (-) 261 WP_214537930.1 DUF1108 family protein -
  QQO15_RS10935 (QQO15_10935) - 2251389..2251574 (-) 186 WP_214540360.1 hypothetical protein -
  QQO15_RS10940 (QQO15_10940) - 2251567..2251890 (-) 324 WP_285238426.1 DUF771 domain-containing protein -
  QQO15_RS10945 (QQO15_10945) - 2251958..2252128 (+) 171 WP_180902892.1 hypothetical protein -
  QQO15_RS10950 (QQO15_10950) - 2252140..2252430 (-) 291 WP_140228647.1 hypothetical protein -
  QQO15_RS10955 (QQO15_10955) - 2252441..2253196 (-) 756 WP_140228648.1 phage regulatory protein/antirepressor Ant -
  QQO15_RS10960 (QQO15_10960) - 2253273..2253500 (+) 228 WP_214537929.1 hypothetical protein -
  QQO15_RS10965 (QQO15_10965) - 2253497..2253661 (-) 165 WP_214537928.1 hypothetical protein -
  QQO15_RS10970 (QQO15_10970) - 2253699..2254142 (-) 444 WP_065354605.1 hypothetical protein -
  QQO15_RS10975 (QQO15_10975) - 2254188..2254400 (-) 213 WP_000213811.1 helix-turn-helix transcriptional regulator -
  QQO15_RS10980 (QQO15_10980) - 2254552..2255274 (+) 723 WP_214537927.1 XRE family transcriptional regulator -
  QQO15_RS10985 (QQO15_10985) - 2255324..2255833 (+) 510 WP_222936263.1 hypothetical protein -
  QQO15_RS10990 (QQO15_10990) - 2255881..2256336 (+) 456 WP_100004256.1 hypothetical protein -
  QQO15_RS10995 (QQO15_10995) - 2256350..2257138 (+) 789 WP_100004255.1 DUF1828 domain-containing protein -
  QQO15_RS11000 (QQO15_11000) - 2257199..2258236 (+) 1038 WP_214537926.1 site-specific integrase -
  QQO15_RS11005 (QQO15_11005) whiA 2259221..2260165 (-) 945 WP_014614491.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16408.09 Da        Isoelectric Point: 4.9225

>NTDB_id=841638 QQO15_RS10910 WP_214537933.1 2249239..2249676(-) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNPSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=841638 QQO15_RS10910 WP_214537933.1 2249239..2249676(-) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCCATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.593
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

73.103

0.414
  ssbA Streptococcus mutans UA159

39.31

100

0.393
  ssb Vibrio cholerae strain A1552

31.792

100

0.379
  ssbB/cilA Streptococcus mitis NCTC 12261

37.931

100

0.379
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.931

100

0.379
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.931

100

0.379
  ssb Glaesserella parasuis strain SC1401

30.337

100

0.372
  ssbB/cilA Streptococcus pneumoniae D39

37.241

100

0.372
  ssbB/cilA Streptococcus pneumoniae R6

37.241

100

0.372
  ssbB/cilA Streptococcus mitis SK321

37.241

100

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

37.241

100

0.372
  ssb Neisseria gonorrhoeae MS11

31.034

100

0.372