Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QQO15_RS10910 | Genome accession | NZ_CP127094 |
| Coordinates | 2249239..2249676 (-) | Length | 145 a.a. |
| NCBI ID | WP_214537933.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain 19KM0990 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2244239..2254676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQO15_RS10860 (QQO15_10860) | - | 2244245..2244742 (-) | 498 | WP_129945892.1 | DUF3310 domain-containing protein | - |
| QQO15_RS10865 (QQO15_10865) | - | 2244899..2245207 (-) | 309 | WP_285238424.1 | hypothetical protein | - |
| QQO15_RS10870 (QQO15_10870) | - | 2245218..2245436 (-) | 219 | WP_096638649.1 | hypothetical protein | - |
| QQO15_RS10875 (QQO15_10875) | - | 2245429..2245851 (-) | 423 | WP_103863100.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QQO15_RS10880 (QQO15_10880) | - | 2245835..2246056 (-) | 222 | WP_096533163.1 | hypothetical protein | - |
| QQO15_RS10885 (QQO15_10885) | - | 2246053..2247297 (-) | 1245 | WP_214537937.1 | DnaB helicase C-terminal domain-containing protein | - |
| QQO15_RS10890 (QQO15_10890) | - | 2247290..2247637 (-) | 348 | WP_214537936.1 | hypothetical protein | - |
| QQO15_RS10895 (QQO15_10895) | - | 2247642..2248388 (-) | 747 | WP_214537935.1 | DnaD domain protein | - |
| QQO15_RS10900 (QQO15_10900) | - | 2248381..2249055 (-) | 675 | WP_214537934.1 | putative HNHc nuclease | - |
| QQO15_RS10905 (QQO15_10905) | - | 2249064..2249258 (-) | 195 | WP_285238425.1 | hypothetical protein | - |
| QQO15_RS10910 (QQO15_10910) | ssbA | 2249239..2249676 (-) | 438 | WP_214537933.1 | single-stranded DNA-binding protein | Machinery gene |
| QQO15_RS10915 (QQO15_10915) | - | 2249676..2250347 (-) | 672 | WP_214537932.1 | ERF family protein | - |
| QQO15_RS10920 (QQO15_10920) | - | 2250344..2250829 (-) | 486 | WP_214537931.1 | siphovirus Gp157 family protein | - |
| QQO15_RS10925 (QQO15_10925) | - | 2250813..2251037 (-) | 225 | WP_096666742.1 | hypothetical protein | - |
| QQO15_RS10930 (QQO15_10930) | - | 2251049..2251309 (-) | 261 | WP_214537930.1 | DUF1108 family protein | - |
| QQO15_RS10935 (QQO15_10935) | - | 2251389..2251574 (-) | 186 | WP_214540360.1 | hypothetical protein | - |
| QQO15_RS10940 (QQO15_10940) | - | 2251567..2251890 (-) | 324 | WP_285238426.1 | DUF771 domain-containing protein | - |
| QQO15_RS10945 (QQO15_10945) | - | 2251958..2252128 (+) | 171 | WP_180902892.1 | hypothetical protein | - |
| QQO15_RS10950 (QQO15_10950) | - | 2252140..2252430 (-) | 291 | WP_140228647.1 | hypothetical protein | - |
| QQO15_RS10955 (QQO15_10955) | - | 2252441..2253196 (-) | 756 | WP_140228648.1 | phage regulatory protein/antirepressor Ant | - |
| QQO15_RS10960 (QQO15_10960) | - | 2253273..2253500 (+) | 228 | WP_214537929.1 | hypothetical protein | - |
| QQO15_RS10965 (QQO15_10965) | - | 2253497..2253661 (-) | 165 | WP_214537928.1 | hypothetical protein | - |
| QQO15_RS10970 (QQO15_10970) | - | 2253699..2254142 (-) | 444 | WP_065354605.1 | hypothetical protein | - |
| QQO15_RS10975 (QQO15_10975) | - | 2254188..2254400 (-) | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16408.09 Da Isoelectric Point: 4.9225
>NTDB_id=841638 QQO15_RS10910 WP_214537933.1 2249239..2249676(-) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNPSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNPSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=841638 QQO15_RS10910 WP_214537933.1 2249239..2249676(-) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCCATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCCATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.669 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.593 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
73.103 |
0.414 |
| ssbA | Streptococcus mutans UA159 |
39.31 |
100 |
0.393 |
| ssb | Vibrio cholerae strain A1552 |
31.792 |
100 |
0.379 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.931 |
100 |
0.379 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.931 |
100 |
0.379 |
| ssb | Glaesserella parasuis strain SC1401 |
30.337 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.241 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
31.034 |
100 |
0.372 |