Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QQO15_RS03440 | Genome accession | NZ_CP127094 |
| Coordinates | 776757..777179 (+) | Length | 140 a.a. |
| NCBI ID | WP_285238525.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain 19KM0990 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 771757..782179
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQO15_RS03390 (QQO15_03390) | - | 771976..772143 (-) | 168 | WP_181393644.1 | hypothetical protein | - |
| QQO15_RS03395 (QQO15_03395) | - | 772182..772856 (-) | 675 | WP_100002733.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QQO15_RS03400 (QQO15_03400) | - | 772874..773206 (-) | 333 | WP_100002731.1 | helix-turn-helix transcriptional regulator | - |
| QQO15_RS03405 (QQO15_03405) | - | 773487..773681 (+) | 195 | WP_262616150.1 | helix-turn-helix transcriptional regulator | - |
| QQO15_RS03410 (QQO15_03410) | - | 773681..774481 (+) | 801 | WP_234987345.1 | BRO family protein | - |
| QQO15_RS03415 (QQO15_03415) | - | 774493..774714 (+) | 222 | WP_100002727.1 | hypothetical protein | - |
| QQO15_RS03420 (QQO15_03420) | - | 775084..775344 (+) | 261 | WP_285238522.1 | DUF1108 family protein | - |
| QQO15_RS03425 (QQO15_03425) | - | 775356..775619 (+) | 264 | WP_285238523.1 | hypothetical protein | - |
| QQO15_RS03430 (QQO15_03430) | - | 775603..776088 (+) | 486 | WP_060830236.1 | siphovirus Gp157 family protein | - |
| QQO15_RS03435 (QQO15_03435) | - | 776089..776757 (+) | 669 | WP_275329138.1 | ERF family protein | - |
| QQO15_RS03440 (QQO15_03440) | ssbA | 776757..777179 (+) | 423 | WP_285238525.1 | single-stranded DNA-binding protein | Machinery gene |
| QQO15_RS03445 (QQO15_03445) | - | 777191..777349 (+) | 159 | WP_158491204.1 | hypothetical protein | - |
| QQO15_RS03450 (QQO15_03450) | - | 777350..778030 (+) | 681 | WP_140232750.1 | putative HNHc nuclease | - |
| QQO15_RS03455 (QQO15_03455) | - | 778017..778340 (+) | 324 | WP_100008595.1 | hypothetical protein | - |
| QQO15_RS03460 (QQO15_03460) | - | 778667..779407 (+) | 741 | WP_285238526.1 | conserved phage C-terminal domain-containing protein | - |
| QQO15_RS03465 (QQO15_03465) | - | 779410..780186 (+) | 777 | WP_100008597.1 | ATP-binding protein | - |
| QQO15_RS03470 (QQO15_03470) | - | 780180..780359 (+) | 180 | WP_115834533.1 | hypothetical protein | - |
| QQO15_RS03475 (QQO15_03475) | - | 780360..780791 (+) | 432 | WP_199569651.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QQO15_RS03480 (QQO15_03480) | - | 780784..781002 (+) | 219 | WP_065354059.1 | hypothetical protein | - |
| QQO15_RS03485 (QQO15_03485) | - | 781015..781335 (+) | 321 | WP_285238527.1 | hypothetical protein | - |
| QQO15_RS03490 (QQO15_03490) | - | 781332..781496 (+) | 165 | WP_180291839.1 | hypothetical protein | - |
| QQO15_RS03495 (QQO15_03495) | - | 781496..781948 (+) | 453 | WP_285238528.1 | DUF3310 domain-containing protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15756.41 Da Isoelectric Point: 4.9225
>NTDB_id=841614 QQO15_RS03440 WP_285238525.1 776757..777179(+) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLETKNNNQSQQQGQAPARDNPFANANGPIDIDDEDLPF
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLSKGNLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLETKNNNQSQQQGQAPARDNPFANANGPIDIDDEDLPF
Nucleotide
Download Length: 423 bp
>NTDB_id=841614 QQO15_RS03440 WP_285238525.1 776757..777179(+) (ssbA) [Staphylococcus pseudintermedius strain 19KM0990]
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACAACGCAATCAGGCGTTGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTATGAGAATCAAGAAGGCCGGCGTGTATTTGTCACAGAAGTTGTGTGTGATAGCGTGCAATTTTTAGAGACTAAAAA
TAACAATCAGTCACAACAACAAGGGCAAGCGCCTGCGCGAGATAATCCGTTTGCAAATGCCAATGGACCAATTGACATTG
ATGATGAAGATTTGCCTTTCTAG
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACAACGCAATCAGGCGTTGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAACGTGAACAACTATCTAAGCAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTATGAGAATCAAGAAGGCCGGCGTGTATTTGTCACAGAAGTTGTGTGTGATAGCGTGCAATTTTTAGAGACTAAAAA
TAACAATCAGTCACAACAACAAGGGCAAGCGCCTGCGCGAGATAATCCGTTTGCAAATGCCAATGGACCAATTGACATTG
ATGATGAAGATTTGCCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.069 |
100 |
0.693 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.621 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
75.714 |
0.436 |
| ssbA | Streptococcus mutans UA159 |
40 |
100 |
0.4 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.286 |
100 |
0.393 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.571 |
100 |
0.386 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
38.571 |
100 |
0.386 |
| ssb | Glaesserella parasuis strain SC1401 |
29.944 |
100 |
0.379 |
| ssb | Neisseria meningitidis MC58 |
30.814 |
100 |
0.379 |
| ssb | Neisseria gonorrhoeae MS11 |
30.814 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.857 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.857 |
100 |
0.379 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.857 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.857 |
100 |
0.379 |