Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH36_RS22655 Genome accession   NZ_CP126080
Coordinates   4530274..4530690 (-) Length   138 a.a.
NCBI ID   WP_144478413.1    Uniprot ID   A0AA95HY22
Organism   Mesobacillus sp. AQ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4524977..4541198 4530274..4530690 within 0


Gene organization within MGE regions


Location: 4524977..4541198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS22640 (QNH36_22640) - 4524977..4527802 (+) 2826 WP_283904326.1 DEAD/DEAH box helicase -
  QNH36_RS22645 (QNH36_22645) - 4528062..4529741 (-) 1680 WP_283904327.1 cell wall-binding repeat-containing protein -
  QNH36_RS22650 (QNH36_22650) - 4530075..4530281 (-) 207 WP_144478345.1 hypothetical protein -
  QNH36_RS22655 (QNH36_22655) ssbB 4530274..4530690 (-) 417 WP_144478413.1 single-stranded DNA-binding protein Machinery gene
  QNH36_RS22660 (QNH36_22660) - 4530950..4531384 (+) 435 WP_144478347.1 YwpF family protein -
  QNH36_RS22665 (QNH36_22665) - 4531485..4531799 (-) 315 WP_144478349.1 hypothetical protein -
  QNH36_RS22670 (QNH36_22670) fabZ 4532213..4532635 (-) 423 WP_144478351.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH36_RS22675 (QNH36_22675) - 4532724..4532984 (-) 261 WP_144478353.1 DNA-directed RNA polymerase subunit beta -
  QNH36_RS22680 (QNH36_22680) - 4533003..4533851 (-) 849 WP_144478355.1 flagellar hook-basal body protein -
  QNH36_RS22685 (QNH36_22685) - 4533952..4534770 (-) 819 WP_283904328.1 flagellar hook-basal body protein -
  QNH36_RS22690 (QNH36_22690) - 4534973..4535977 (-) 1005 WP_283904329.1 rod shape-determining protein -
  QNH36_RS22695 (QNH36_22695) - 4536274..4536456 (+) 183 WP_283904330.1 hypothetical protein -
  QNH36_RS22700 (QNH36_22700) - 4536608..4536934 (+) 327 WP_283904331.1 hypothetical protein -
  QNH36_RS22705 (QNH36_22705) cdiI 4537196..4537552 (-) 357 WP_283904332.1 ribonuclease toxin immunity protein CdiI -
  QNH36_RS22710 (QNH36_22710) - 4537564..4538703 (-) 1140 WP_283904333.1 CdiA family toxin C-terminal domain-containing protein -
  QNH36_RS22715 (QNH36_22715) - 4538700..4539176 (-) 477 WP_283904334.1 RHS repeat-associated core domain-containing protein -
  QNH36_RS22720 (QNH36_22720) - 4539276..4539707 (-) 432 WP_283904335.1 hypothetical protein -
  QNH36_RS22725 (QNH36_22725) - 4540243..4540782 (-) 540 WP_283904336.1 RNA 2'-phosphotransferase -
  QNH36_RS22730 (QNH36_22730) - 4540830..4541198 (-) 369 WP_283904337.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15358.38 Da        Isoelectric Point: 9.0124

>NTDB_id=834722 QNH36_RS22655 WP_144478413.1 4530274..4530690(-) (ssbB) [Mesobacillus sp. AQ2]
MINQVTLVGRLTRDPDLRYTPEGKAVSNITLAVNRHYKNASGEIEADFVHCILWGKTAENTTNYCKKGAVLGVTGRIQTR
HYDNQEGKRVYVTEVVAEGVRFLSSKPVSNKEAPQSQQPAQPPQPVPSVPQREELPFV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=834722 QNH36_RS22655 WP_144478413.1 4530274..4530690(-) (ssbB) [Mesobacillus sp. AQ2]
GTGATCAATCAAGTAACGCTAGTAGGCAGGCTGACGCGTGATCCCGACCTAAGGTATACGCCTGAGGGCAAGGCGGTGTC
GAATATCACGCTCGCAGTCAACCGGCATTATAAAAATGCAAGCGGCGAAATCGAAGCCGACTTCGTCCATTGCATCCTCT
GGGGCAAGACGGCCGAGAACACGACCAACTACTGTAAAAAGGGCGCTGTCCTTGGGGTGACCGGCCGAATCCAGACACGG
CACTATGATAATCAGGAAGGGAAACGTGTCTATGTGACCGAGGTCGTTGCCGAGGGAGTCAGGTTTTTAAGTTCAAAACC
GGTCAGTAACAAAGAAGCGCCCCAATCCCAGCAACCGGCCCAGCCGCCGCAGCCCGTCCCATCTGTGCCGCAAAGAGAGG
AGCTTCCATTTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

69.159

77.536

0.536
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

76.812

0.471
  ssb Latilactobacillus sakei subsp. sakei 23K

56.881

78.986

0.449
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.606

99.275

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

40.58

100

0.406
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.58

100

0.406
  ssbB/cilA Streptococcus pneumoniae D39

39.855

100

0.399
  ssbB/cilA Streptococcus pneumoniae Rx1

39.855

100

0.399
  ssbB/cilA Streptococcus pneumoniae R6

39.855

100

0.399
  ssbB/cilA Streptococcus mitis SK321

39.855

100

0.399
  ssb Vibrio cholerae strain A1552

33.758

100

0.384
  ssbA Streptococcus mutans UA159

36.957

100

0.37
  ssb Neisseria meningitidis MC58

32.278

100

0.37
  ssb Neisseria gonorrhoeae MS11

32.278

100

0.37