Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   bsdcttw_RS06995 Genome accession   NZ_AP023368
Coordinates   1620646..1622511 (+) Length   621 a.a.
NCBI ID   WP_185258663.1    Uniprot ID   A0A7I8DIK3
Organism   Anaerocolumna chitinilytica strain CTTW     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615646..1627511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bsdcttw_RS06985 (bsdcttw_13670) - 1617828..1618367 (+) 540 WP_185258662.1 MarR family winged helix-turn-helix transcriptional regulator -
  bsdcttw_RS06990 (bsdcttw_13680) - 1618407..1620653 (+) 2247 WP_185259740.1 ABC transporter ATP-binding protein -
  bsdcttw_RS06995 (bsdcttw_13690) rcrQ 1620646..1622511 (+) 1866 WP_185258663.1 ABC transporter ATP-binding protein Regulator
  bsdcttw_RS07000 (bsdcttw_13700) - 1622758..1622916 (+) 159 WP_185258664.1 hypothetical protein -
  bsdcttw_RS07005 (bsdcttw_13710) - 1623038..1623934 (+) 897 WP_185258665.1 hypothetical protein -
  bsdcttw_RS07010 (bsdcttw_13720) - 1624039..1625325 (+) 1287 WP_185258666.1 Ig-like domain-containing protein -
  bsdcttw_RS07015 (bsdcttw_13730) - 1625537..1626313 (-) 777 WP_185258667.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 68792.28 Da        Isoelectric Point: 6.7873

>NTDB_id=82631 bsdcttw_RS06995 WP_185258663.1 1620646..1622511(+) (rcrQ) [Anaerocolumna chitinilytica strain CTTW]
MSDEKNVQTARPARASRGPMGGGPGFHGPTEKAKDFKGSISKLIKYISSYKISIIIAILFAIGSTIFFIVGPKILGHVTT
DIFSGLMGKLQGTGSIDFDKIGRTLLILLCLYVVSAFFSFVQGYIMSGVTQKITYRMRKEISQKINRMPMNYFETKTVGE
VLSRVTNDVDTLGQSLNQSITQVITAVTQIIGITIMMISISGRMTLVAILTLPISSLLIALMMKKSQKYFKSQQEYLGHV
NGQVEEVYSGHNIVKAFNGEGQVIEEFEKANGTLYNSAWKSQFLSGMMMPIMTFVGNLGYVAVSILGGYLVIKKTIEVGD
IQSFIQYVRSFNQPIAQIAQISTQLQQTAAAAERVFEFLNEEEEDQFAVNPVNTETVDSRVEFNHVHFGYNPDKIIINDF
SAKIEPGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGEILIDGHNIKDFNRGELRQMFGMVLQDTWLFNGSIMENIRYGKA
DATDEEVIAAAKAAHAHHFIQTLPGGYQMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAM
DNLMKGRTSFVIAHRLSTIRDADLILVMRDGDIVEQGSHDELLKQGGFYASLYNSQFEETA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=82631 bsdcttw_RS06995 WP_185258663.1 1620646..1622511(+) (rcrQ) [Anaerocolumna chitinilytica strain CTTW]
ATGAGTGATGAAAAAAATGTACAGACAGCACGCCCTGCTAGGGCTTCCAGAGGACCTATGGGCGGTGGCCCGGGGTTTCA
TGGACCTACAGAGAAAGCAAAGGATTTCAAAGGCTCCATATCAAAGTTAATTAAGTATATATCTTCCTATAAAATCAGCA
TTATCATAGCGATATTATTTGCAATCGGTAGTACAATATTTTTCATTGTAGGGCCAAAGATTCTGGGTCATGTTACCACA
GATATCTTTTCAGGGCTGATGGGAAAATTACAGGGAACAGGAAGTATCGATTTTGACAAGATAGGAAGGACACTTCTAAT
ACTTCTATGTCTATATGTGGTAAGTGCTTTCTTCTCCTTTGTTCAGGGGTACATCATGTCCGGTGTTACTCAGAAGATAA
CTTACAGAATGAGAAAAGAAATTTCTCAGAAGATAAACCGCATGCCAATGAATTACTTTGAAACAAAGACAGTCGGTGAA
GTGTTATCAAGAGTAACCAATGATGTCGATACCTTAGGACAGAGCTTAAACCAGAGTATTACCCAGGTTATTACAGCAGT
AACCCAAATTATCGGTATTACTATCATGATGATATCTATCAGCGGCAGAATGACTCTGGTTGCAATACTGACACTTCCGA
TTTCTTCTTTATTGATTGCTCTAATGATGAAGAAATCCCAGAAGTATTTTAAGTCTCAACAGGAATATCTGGGTCATGTA
AATGGCCAGGTAGAGGAAGTATATTCCGGTCATAACATCGTAAAGGCATTTAATGGGGAAGGCCAGGTTATTGAAGAATT
TGAAAAGGCTAATGGCACTCTTTATAATTCTGCCTGGAAGTCTCAGTTCTTATCCGGTATGATGATGCCTATTATGACTT
TTGTAGGAAACCTCGGATATGTAGCAGTATCTATCTTAGGTGGTTATCTTGTAATTAAGAAGACCATCGAGGTTGGTGAT
ATCCAGTCTTTTATACAGTATGTAAGAAGTTTTAACCAGCCTATTGCACAGATTGCACAGATATCTACCCAGCTTCAGCA
GACAGCTGCGGCTGCAGAAAGAGTATTTGAATTCCTAAACGAAGAAGAAGAAGACCAATTCGCAGTGAATCCGGTAAATA
CGGAGACGGTAGACAGCAGAGTTGAATTTAATCATGTACACTTTGGTTATAACCCTGATAAGATTATTATCAATGATTTC
TCCGCAAAGATAGAACCCGGACAAAAGATTGCCATTGTCGGACCTACCGGAGCCGGAAAGACTACTATGGTTAAACTCTT
AATGCGCTTCTATGATGTAAATTCCGGTGAAATCTTAATTGACGGGCATAACATCAAGGACTTTAACCGCGGCGAACTTC
GTCAGATGTTTGGTATGGTATTACAAGATACCTGGCTCTTTAACGGTTCTATTATGGAAAACATCCGTTACGGTAAAGCA
GATGCTACGGATGAAGAAGTTATTGCAGCAGCTAAGGCAGCTCATGCTCATCACTTTATTCAGACACTTCCCGGAGGCTA
TCAGATGGAATTAAATGAAGAAGCCAGCAATGTATCCCAAGGTCAGAAACAGTTGTTAACCATTGCAAGAGCTATTCTGG
CAGATCCTAAGATTCTTATCCTTGATGAAGCTACCAGCTCCGTTGATACCAGAACAGAAGTAAGAATTCAGAAGGCGATG
GATAACCTGATGAAGGGAAGAACCAGCTTTGTTATCGCTCACAGATTATCAACCATCCGTGATGCTGACCTTATTCTTGT
AATGAGGGATGGTGACATTGTAGAACAGGGCAGCCATGATGAGCTCTTAAAGCAGGGCGGCTTCTATGCAAGTCTCTATA
ATTCACAGTTTGAAGAGACCGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(398-546)

ABC transporter transmembrane region (ABC_membrane)

(54-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8DIK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.688

93.881

0.504

Multiple sequence alignment