Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QFW95_RS23370 | Genome accession | NZ_CP124219 |
| Coordinates | 5240251..5240670 (-) | Length | 139 a.a. |
| NCBI ID | WP_047229858.1 | Uniprot ID | A0A1N7GWW4 |
| Organism | Pseudomonas sp. P13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5235251..5245670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFW95_RS23355 | - | 5236063..5238996 (+) | 2934 | WP_047229855.1 | DUF748 domain-containing protein | - |
| QFW95_RS23360 | - | 5238998..5239294 (+) | 297 | WP_047229856.1 | DUF2845 domain-containing protein | - |
| QFW95_RS23365 | - | 5239617..5239970 (-) | 354 | WP_047229857.1 | BON domain-containing protein | - |
| QFW95_RS23370 | pilA | 5240251..5240670 (-) | 420 | WP_047229858.1 | pilin | Machinery gene |
| QFW95_RS23375 | pilB | 5240896..5242596 (+) | 1701 | WP_047229859.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QFW95_RS23380 | pilC | 5242599..5243816 (+) | 1218 | WP_274090860.1 | type II secretion system F family protein | Machinery gene |
| QFW95_RS23385 | pilD | 5243818..5244687 (+) | 870 | WP_047229861.1 | A24 family peptidase | Machinery gene |
| QFW95_RS23390 | coaE | 5244699..5245322 (+) | 624 | WP_047229862.1 | dephospho-CoA kinase | - |
| QFW95_RS23395 | yacG | 5245319..5245519 (+) | 201 | WP_047229863.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 13927.05 Da Isoelectric Point: 7.5917
>NTDB_id=823979 QFW95_RS23370 WP_047229858.1 5240251..5240670(-) (pilA) [Pseudomonas sp. P13]
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
Nucleotide
Download Length: 420 bp
>NTDB_id=823979 QFW95_RS23370 WP_047229858.1 5240251..5240670(-) (pilA) [Pseudomonas sp. P13]
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACGCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACGCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
48.551 |
99.281 |
0.482 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.175 |
98.561 |
0.475 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.432 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
97.122 |
0.417 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.621 |
100 |
0.403 |
| pilA2 | Legionella pneumophila str. Paris |
38.621 |
100 |
0.403 |
| comP | Acinetobacter baylyi ADP1 |
36.424 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae strain A1552 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae C6706 |
36.986 |
100 |
0.388 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.625 |
92.086 |
0.374 |