Detailed information NTG0823982

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFW95_RS23385
• Genome accession: NZ_CP124219
• Coordinates: 5243818..5244687 (+)
• Length: 289 a.a.
• NCBI ID: WP_047229861.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5238818..5249687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW95_RS23360	-	5238998..5239294 (+)	297	WP_047229856.1	DUF2845 domain-containing protein	-
QFW95_RS23365	-	5239617..5239970 (-)	354	WP_047229857.1	BON domain-containing protein	-
QFW95_RS23370	pilA	5240251..5240670 (-)	420	WP_047229858.1	pilin	Machinery gene
QFW95_RS23375	pilB	5240896..5242596 (+)	1701	WP_047229859.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QFW95_RS23380	pilC	5242599..5243816 (+)	1218	WP_274090860.1	type II secretion system F family protein	Machinery gene
QFW95_RS23385	pilD	5243818..5244687 (+)	870	WP_047229861.1	A24 family peptidase	Machinery gene
QFW95_RS23390	coaE	5244699..5245322 (+)	624	WP_047229862.1	dephospho-CoA kinase	-
QFW95_RS23395	yacG	5245319..5245519 (+)	201	WP_047229863.1	DNA gyrase inhibitor YacG	-
QFW95_RS23400	-	5245552..5245767 (-)	216	WP_076386357.1	hypothetical protein	-
QFW95_RS23405	-	5245831..5246517 (-)	687	WP_047229865.1	energy-coupling factor ABC transporter permease	-
QFW95_RS23410	-	5246663..5247289 (+)	627	WP_047229866.1	DUF1780 domain-containing protein	-
QFW95_RS23415	-	5247286..5247813 (+)	528	WP_047229867.1	MOSC domain-containing protein	-
QFW95_RS23420	-	5247866..5248039 (+)	174	WP_076386361.1	DUF3094 family protein	-
QFW95_RS23425	-	5248100..5249398 (+)	1299	WP_047229869.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31869.04 Da
• Isoelectric Point: 8.0377

>NTDB_id=823982 QFW95_RS23385 WP_047229861.1 5243818..5244687(+) (pilD) [Pseudomonas sp. P13]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWYFGFGWQAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS

Nucleotide

• Length: 870 bp

>NTDB_id=823982 QFW95_RS23385 WP_047229861.1 5243818..5244687(+) (pilD) [Pseudomonas sp. P13]
ATGCCCCTGACCGAATTTTTCGCGCTGTATCCCCTGGCCTTTGTGCTCGCCGCTTTACTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAACATTCCGCTATTGAGTTACCTGGCATTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
CTATCCCCTGACCGAACTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGTATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGTTGCCTGACACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCCCCTTGAATCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCTCCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Acinetobacter nosocomialis M2	48.905	94.81	0.464