Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QFW95_RS23380 Genome accession   NZ_CP124219
Coordinates   5242599..5243816 (+) Length   405 a.a.
NCBI ID   WP_274090860.1    Uniprot ID   -
Organism   Pseudomonas sp. P13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5237599..5248816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW95_RS23360 - 5238998..5239294 (+) 297 WP_047229856.1 DUF2845 domain-containing protein -
  QFW95_RS23365 - 5239617..5239970 (-) 354 WP_047229857.1 BON domain-containing protein -
  QFW95_RS23370 pilA 5240251..5240670 (-) 420 WP_047229858.1 pilin Machinery gene
  QFW95_RS23375 pilB 5240896..5242596 (+) 1701 WP_047229859.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QFW95_RS23380 pilC 5242599..5243816 (+) 1218 WP_274090860.1 type II secretion system F family protein Machinery gene
  QFW95_RS23385 pilD 5243818..5244687 (+) 870 WP_047229861.1 A24 family peptidase Machinery gene
  QFW95_RS23390 coaE 5244699..5245322 (+) 624 WP_047229862.1 dephospho-CoA kinase -
  QFW95_RS23395 yacG 5245319..5245519 (+) 201 WP_047229863.1 DNA gyrase inhibitor YacG -
  QFW95_RS23400 - 5245552..5245767 (-) 216 WP_076386357.1 hypothetical protein -
  QFW95_RS23405 - 5245831..5246517 (-) 687 WP_047229865.1 energy-coupling factor ABC transporter permease -
  QFW95_RS23410 - 5246663..5247289 (+) 627 WP_047229866.1 DUF1780 domain-containing protein -
  QFW95_RS23415 - 5247286..5247813 (+) 528 WP_047229867.1 MOSC domain-containing protein -
  QFW95_RS23420 - 5247866..5248039 (+) 174 WP_076386361.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44188.92 Da        Isoelectric Point: 10.1196

>NTDB_id=823981 QFW95_RS23380 WP_274090860.1 5242599..5243816(+) (pilC) [Pseudomonas sp. P13]
MAVKAIKTDVYTWEGKDRKGTKMTGELTGQSPALVKAQLRKQGINPGKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAASLRKSPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
EALKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQQWWWMLLGGAVAAFFGVK
HALKRFQGLRDWRDKWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNMAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=823981 QFW95_RS23380 WP_274090860.1 5242599..5243816(+) (pilC) [Pseudomonas sp. P13]
ATGGCGGTCAAGGCAATAAAAACCGACGTTTACACGTGGGAAGGCAAAGACCGCAAAGGCACGAAAATGACCGGCGAGCT
GACTGGGCAGAGCCCGGCCCTGGTCAAGGCCCAGTTGCGTAAACAAGGCATCAACCCAGGCAAGGTTCGCAAGAAGTCCA
CCTCGATATTCAGCAAGGGCAAGCGTATCAAGCCATTGGATATCGCCCTGTTCACTCGTCAGATGGCGACCATGCTCAAG
GCCGGCGTGCCCTTGTTGCAGGCGTTCGACATCATTGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCGTCGTTGCGCAAGAGCCCGCAATACTTCGACGAACTGTACT
GCAACCTGGTGGACGCCGGTGAACAGGCCGGCGCCCTGGATACGCTGCTGGAGCGCGTCGCGACCTACAAGGAAAAAAGC
GAAGCCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGGCCGCTGTGGTGCTCGTCGCCGCCGTGGTCACGGGTAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTATTCTCCGGGTTCGGCGCCCAACTGCCGGCCTTCACGGTGATGG
TCATCGGCCTGTCGGAGTTCATGCAGCAGTGGTGGTGGATGCTGCTGGGCGGCGCGGTGGCGGCGTTCTTCGGTGTCAAA
CATGCACTCAAGCGCTTCCAGGGCTTGCGTGACTGGCGCGATAAATGGCTGCTCAAACTGCCGCTGATCGGCACCCTGAT
GTACAAATCCGCCGTGGCCCGCTACGCCCGGACCCTGTCCACGACATTCGCGGCCGGCGTGCCGCTGGTGGAAGCCCTGG
ACTCGGTATCAGGCGCCACCGGTAACGTGGTGTTCAAACGCGCGGTACAACGCATCCGGCAGGATGTCTCGACCGGCATG
CAATTGAATTTTTCCATGCGTGCTTCAGGCATATTCCCGAACATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
CGCGCTGGACGACATGCTCGACAAAGTGGCGAGCTTTTATGAAGCCGAGGTGGACAATCTGGTGGACAATCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGCGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

59.352

99.012

0.588
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

55.25

98.765

0.546
  pilC Vibrio cholerae strain A1552

43.939

97.778

0.43
  pilG Neisseria meningitidis 44/76-A

42.469

100

0.425
  pilC Vibrio campbellii strain DS40M4

43.434

97.778

0.425
  pilG Neisseria gonorrhoeae MS11

42.537

99.259

0.422
  pilC Thermus thermophilus HB27

38.903

99.012

0.385