Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QBS04_RS12465 Genome accession   NZ_CP121854
Coordinates   2641648..2642787 (+) Length   379 a.a.
NCBI ID   WP_236370620.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 13997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2636648..2647787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS12435 - 2636869..2637933 (+) 1065 WP_005353109.1 3-deoxy-7-phosphoheptulonate synthase -
  QBS04_RS12440 aac(6') 2637940..2638398 (+) 459 WP_005361592.1 aminoglycoside 6'-N-acetyltransferase -
  QBS04_RS12445 - 2638421..2639218 (-) 798 WP_224970182.1 ATP-binding cassette domain-containing protein -
  QBS04_RS12450 btuC 2639284..2640291 (-) 1008 WP_076495563.1 vitamin B12 ABC transporter permease BtuC -
  QBS04_RS12455 - 2640389..2641120 (-) 732 WP_279464917.1 transporter substrate-binding domain-containing protein -
  QBS04_RS12460 - 2641233..2641589 (+) 357 WP_005337656.1 DMT family protein -
  QBS04_RS12465 pilU 2641648..2642787 (+) 1140 WP_236370620.1 type IVa pilus ATPase TapW Machinery gene
  QBS04_RS12470 - 2642882..2643331 (-) 450 WP_019446653.1 isoprenylcysteine carboxylmethyltransferase family protein -
  QBS04_RS12475 alr 2643505..2644731 (+) 1227 WP_005353131.1 alanine racemase -
  QBS04_RS12480 - 2644928..2645872 (-) 945 WP_005337664.1 TerC family protein -
  QBS04_RS12485 oppF 2646175..2647170 (-) 996 WP_005337666.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42267.37 Da        Isoelectric Point: 6.6014

>NTDB_id=814801 QBS04_RS12465 WP_236370620.1 2641648..2642787(+) (pilU) [Aeromonas veronii strain ANYA 13997]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLNETPLEPGEVARIAAEIMDGEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIEEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKGDFF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=814801 QBS04_RS12465 WP_236370620.1 2641648..2642787(+) (pilU) [Aeromonas veronii strain ANYA 13997]
ATGGAATTGCGAGACATGTTACAGATCCTGGCCAAGCAGGATGGCTCAGACCTCTATCTGTCGACCGGCGCGCCCCCCTG
CGCCAAATTTAACGGCGGCCTGCGCCCCCTCAACGAAACGCCGCTGGAGCCGGGTGAAGTGGCGCGGATCGCCGCCGAGA
TCATGGATGGCGAGCAGAAGCAGCAGTTCGAGAAGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATCGGCCGC
TTTCGGGTCAACATCTTCAAGCAGCGCAACGAAGTCTCTCTGGTGGCCCGCAACATCAAGACCGAAATCCCCCGCTTTGA
AGATCTCAAACTCCCGCCTGTGCTGCTCGACACCATCATGGAGAAACGTGGCCTGGTGCTGTTTGTCGGCGGTACCGGCT
CGGGCAAATCCACTTCGCTGGCAGCCCTTATCGACCATCGCAACCGCAACAGCGGTGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTTCATCGTCACCGCAAGAGCATCATCAACCAGCGGGAGGTTGGCGTGGATACCCGCAGCTTCCACGC
AGCCCTGAAAAACACCCTGCGTCAGGCGCCGGATGTCATTCTTATCGGCGAGATCCGCGATCGCGAGACCATGGAACATG
CGCTGGCCTTCTCCGAAACCGGCCACCTTGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCCGAGGAGCGCCGTCCGCAACTGCTCAACGATCTGGGCAACAACCTCAAGGCCTTTGTCTCCCAGCG
GCTGGTGAAAACCACCGATGGCGGTCGCCGGGCCGCGGTGGAGATCATGCTTGGCACCCACACCATCCGCGACATGATCA
AGCGCGGCGAATTTGGCGGCCTCAAAGAGGTGATGGAAAAATCCAAGGCCCTCGGTATGGTCACCTTCGACAGTGCCCTG
TTTGATCTGGTAGTGGAAGGGGTAATTGAGGAAGAAGAGGCGGTGAAAAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAGAAGGGGCAGATTGCCAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAACCCACCAAGGACG
AGAAGGGCGATTTTTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.474

100

0.546
  pilU Acinetobacter baylyi ADP1

53.239

93.668

0.499
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.888

89.446

0.375
  pilT Legionella pneumophila strain ERS1305867

42.515

88.127

0.375
  pilT Legionella pneumophila strain Lp02

42.515

88.127

0.375
  pilT Pseudomonas aeruginosa PAK

41.279

90.765

0.375
  pilT Pseudomonas stutzeri DSM 10701

40.698

90.765

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

87.863

0.367
  pilT Vibrio cholerae strain A1552

41.742

87.863

0.367
  pilT Acinetobacter baumannii strain A118

41.617

88.127

0.367
  pilT Acinetobacter baumannii D1279779

41.617

88.127

0.367
  pilT Acinetobacter nosocomialis M2

41.617

88.127

0.367