Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   P7Y79_RS07605 Genome accession   NZ_CP121207
Coordinates   1571189..1571665 (-) Length   158 a.a.
NCBI ID   WP_278007380.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566189..1576665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS07575 (P7Y79_07575) - 1566264..1566488 (-) 225 WP_006531079.1 acyl carrier protein -
  P7Y79_RS07580 (P7Y79_07580) - 1566550..1567524 (-) 975 WP_278007849.1 beta-ketoacyl-ACP synthase III -
  P7Y79_RS07585 (P7Y79_07585) - 1567527..1567961 (-) 435 WP_039695988.1 MarR family transcriptional regulator -
  P7Y79_RS07590 (P7Y79_07590) - 1568077..1568865 (-) 789 WP_039695989.1 enoyl-CoA hydratase -
  P7Y79_RS07595 (P7Y79_07595) - 1569056..1569703 (-) 648 WP_074565172.1 HAD family phosphatase -
  P7Y79_RS07600 (P7Y79_07600) - 1569800..1571158 (+) 1359 WP_278007379.1 aspartate kinase -
  P7Y79_RS07605 (P7Y79_07605) comX/sigX 1571189..1571665 (-) 477 WP_278007380.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19401.26 Da        Isoelectric Point: 9.6123

>NTDB_id=811117 P7Y79_RS07605 WP_278007380.1 1571189..1571665(-) (comX/sigX) [Streptococcus ruminicola strain CNU_77-47]
MDFERYFQTVKPIILKLRRHYFVKLWDYEDWIQEGRIVFFQLLEEHPDLLINEGKRYSYFKTKFSNHVKDTIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLDKVIRGERFEGKKAFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=811117 P7Y79_RS07605 WP_278007380.1 1571189..1571665(-) (comX/sigX) [Streptococcus ruminicola strain CNU_77-47]
GTGGATTTTGAACGCTATTTTCAAACCGTTAAACCAATTATTTTAAAATTACGCCGTCATTATTTTGTCAAACTTTGGGA
TTATGAAGATTGGATTCAAGAAGGTCGAATTGTTTTCTTTCAACTCTTAGAGGAACATCCAGACCTCTTAATTAATGAAG
GCAAACGTTATAGTTACTTTAAAACAAAGTTTTCTAACCATGTTAAAGATACTATCCGCCATCAGGAATCCTTTAAACGG
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTGCCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTATGTGGCTTATCAGGATAGCTTAGCTCGTTTACGAAGAACATTGGGAAGAGAAGACAGACTGAAGTTGGATAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGCCTTTTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.