Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   PYW35_RS00220 Genome accession   NZ_CP118974
Coordinates   45063..46691 (-) Length   542 a.a.
NCBI ID   WP_103323361.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain DSM 15615     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40063..51691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW35_RS00190 - 40557..41279 (-) 723 WP_103322422.1 DNA-methyltransferase -
  PYW35_RS00195 - 41296..42171 (-) 876 WP_239102456.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  PYW35_RS00200 - 42188..43213 (-) 1026 WP_239102458.1 DNA adenine methylase -
  PYW35_RS00205 - 43316..43828 (-) 513 WP_103323364.1 DUF1643 domain-containing protein -
  PYW35_RS00210 - 43844..44155 (-) 312 WP_103323363.1 DUF960 family protein -
  PYW35_RS00215 - 44251..44589 (-) 339 WP_103323362.1 SAUGI family uracil-DNA glycosylase inhibitor -
  PYW35_RS00220 ccrB 45063..46691 (-) 1629 WP_103323361.1 cassette chromosome recombinase CcrB Machinery gene
  PYW35_RS00225 ccrA 46712..48061 (-) 1350 WP_103323360.1 cassette chromosome recombinase CcrA Machinery gene
  PYW35_RS00230 - 48253..48531 (-) 279 WP_031903869.1 hypothetical protein -
  PYW35_RS00235 cch1 48602..50392 (-) 1791 WP_103323359.1 cassette chromosome replicative helicase -
  PYW35_RS00240 ssb 50392..50685 (-) 294 WP_031863540.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62215.24 Da        Isoelectric Point: 9.7135

>NTDB_id=797031 PYW35_RS00220 WP_103323361.1 45063..46691(-) (ccrB) [Mammaliicoccus vitulinus strain DSM 15615]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAFMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=797031 PYW35_RS00220 WP_103323361.1 45063..46691(-) (ccrB) [Mammaliicoccus vitulinus strain DSM 15615]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTCCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCAGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATATATAAAACAAGTCGTTTAGCGCGTAACACATCTGACCTGTTAACAATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAACATGAAATTTGACTCAAATAGTGGAAAATTACTCTTACAAATTTTAGCTTCCTTCTCTG
AATTTGAAAGGAATAACATCGCCGAGGGAGCATTTATGGGGCAGTTGAGAAGGTCTCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAACCAACATGAAGCCAATATTGTGAAATA
TATTTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCACAAAGGCTATGTGACTAAAA
AAGGCAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATTCAATTCGCAAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTAT
TAGTCAAGATTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAA
ATCTGTTAACTGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAATACACTCAAAGAC
GGTACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAATTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801