Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   PYW30_RS00680 Genome accession   NZ_CP118950
Coordinates   139091..139396 (+) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134091..144396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS00660 guaB 135193..136674 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  PYW30_RS00665 rpsU 136797..136973 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  PYW30_RS00670 comGA 137170..138114 (+) 945 WP_042218031.1 competence type IV pilus ATPase ComGA Machinery gene
  PYW30_RS00675 comGB 138053..139072 (+) 1020 WP_255204098.1 competence type IV pilus assembly protein ComGB Machinery gene
  PYW30_RS00680 comYC 139091..139396 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW30_RS00685 comGD 139371..139745 (+) 375 WP_042218026.1 competence type IV pilus minor pilin ComGD -
  PYW30_RS10620 comGE 139648..140022 (+) 375 Protein_127 competence type IV pilus minor pilin ComGE -
  PYW30_RS10625 comYF 140032..140472 (+) 441 WP_042218182.1 competence type IV pilus minor pilin ComGF Machinery gene
  PYW30_RS00695 - 140705..141550 (+) 846 WP_042218024.1 zinc ABC transporter substrate-binding protein -
  PYW30_RS00700 - 141636..142505 (-) 870 WP_042218022.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=796666 PYW30_RS00680 WP_016171026.1 139091..139396(+) (comYC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=796666 PYW30_RS00680 WP_016171026.1 139091..139396(+) (comYC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATTAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAGCTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCTGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386