Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PSH91_RS04220 | Genome accession | NZ_CP117465 |
| Coordinates | 948749..949168 (+) | Length | 139 a.a. |
| NCBI ID | WP_047229858.1 | Uniprot ID | A0A1N7GWW4 |
| Organism | Pseudomonas sp. FP1154 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 943749..954168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH91_RS04195 (PSH91_04195) | yacG | 943900..944100 (-) | 201 | WP_047229863.1 | DNA gyrase inhibitor YacG | - |
| PSH91_RS04200 (PSH91_04200) | coaE | 944097..944720 (-) | 624 | WP_047229862.1 | dephospho-CoA kinase | - |
| PSH91_RS04205 (PSH91_04205) | pilD | 944732..945601 (-) | 870 | WP_047229861.1 | A24 family peptidase | Machinery gene |
| PSH91_RS04210 (PSH91_04210) | pilC | 945603..946820 (-) | 1218 | WP_076386354.1 | type II secretion system F family protein | Machinery gene |
| PSH91_RS04215 (PSH91_04215) | pilB | 946823..948523 (-) | 1701 | WP_047229859.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH91_RS04220 (PSH91_04220) | pilA | 948749..949168 (+) | 420 | WP_047229858.1 | pilin | Machinery gene |
| PSH91_RS04225 (PSH91_04225) | - | 949449..949802 (+) | 354 | WP_047229857.1 | BON domain-containing protein | - |
| PSH91_RS04230 (PSH91_04230) | - | 950126..950422 (-) | 297 | WP_047229856.1 | DUF2845 domain-containing protein | - |
| PSH91_RS04235 (PSH91_04235) | - | 950424..953357 (-) | 2934 | WP_305467392.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 13927.05 Da Isoelectric Point: 7.5917
>NTDB_id=785833 PSH91_RS04220 WP_047229858.1 948749..949168(+) (pilA) [Pseudomonas sp. FP1154]
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
MNKQNGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPTLANIGGTSPTSNCTLT
ASGTAADGTGTIACTLLNAPAPVLGKAITLSRSAAGVWTCASTAVQEFLPAGCTGAAAP
Nucleotide
Download Length: 420 bp
>NTDB_id=785833 PSH91_RS04220 WP_047229858.1 948749..949168(+) (pilA) [Pseudomonas sp. FP1154]
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACCCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
ATGAATAAGCAAAACGGTTTTACCTTGATCGAGTTGCTGATCGTTGTGGCGATCATCGGCATCCTGGCGACGTTTGCGTT
GCCGCAGTATTCCAAGTATCAAGCGCGGGCGAAAGCTACGGCGGGGCTGGCGGAAGTCTCCGCGTTGAAGGTGCCGTTCG
AGGACGTCATGAACCAGGGAACCAACCCGACGTTAGCCAACATCGGCGGAACATCGCCCACCAGCAATTGCACCCTGACC
GCTTCAGGTACTGCAGCGGACGGAACCGGAACCATTGCATGCACCCTGCTGAATGCGCCAGCTCCCGTTCTCGGCAAGGC
AATCACCCTTTCCCGTTCAGCAGCCGGTGTCTGGACCTGCGCTTCGACGGCCGTCCAGGAATTCTTGCCCGCCGGTTGCA
CGGGGGCCGCTGCACCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
48.551 |
99.281 |
0.482 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.175 |
98.561 |
0.475 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.432 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
97.122 |
0.417 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.621 |
100 |
0.403 |
| pilA2 | Legionella pneumophila str. Paris |
38.621 |
100 |
0.403 |
| comP | Acinetobacter baylyi ADP1 |
36.424 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae strain A1552 |
36.986 |
100 |
0.388 |
| pilA | Vibrio cholerae C6706 |
36.986 |
100 |
0.388 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.625 |
92.086 |
0.374 |