Detailed information NTG0785830

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH91_RS04205
• Genome accession: NZ_CP117465
• Coordinates: 944732..945601 (-)
• Length: 289 a.a.
• NCBI ID: WP_047229861.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1154
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 939732..950601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH91_RS04165 (PSH91_04165)	-	940021..941319 (-)	1299	WP_047229869.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH91_RS04170 (PSH91_04170)	-	941380..941553 (-)	174	WP_076386361.1	DUF3094 family protein	-
PSH91_RS04175 (PSH91_04175)	-	941606..942133 (-)	528	WP_047229867.1	MOSC domain-containing protein	-
PSH91_RS04180 (PSH91_04180)	-	942130..942756 (-)	627	WP_305467387.1	DUF1780 domain-containing protein	-
PSH91_RS04185 (PSH91_04185)	-	942902..943588 (+)	687	WP_047229865.1	energy-coupling factor ABC transporter permease	-
PSH91_RS04190 (PSH91_04190)	-	943652..943867 (+)	216	WP_092402997.1	hypothetical protein	-
PSH91_RS04195 (PSH91_04195)	yacG	943900..944100 (-)	201	WP_047229863.1	DNA gyrase inhibitor YacG	-
PSH91_RS04200 (PSH91_04200)	coaE	944097..944720 (-)	624	WP_047229862.1	dephospho-CoA kinase	-
PSH91_RS04205 (PSH91_04205)	pilD	944732..945601 (-)	870	WP_047229861.1	A24 family peptidase	Machinery gene
PSH91_RS04210 (PSH91_04210)	pilC	945603..946820 (-)	1218	WP_076386354.1	type II secretion system F family protein	Machinery gene
PSH91_RS04215 (PSH91_04215)	pilB	946823..948523 (-)	1701	WP_047229859.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH91_RS04220 (PSH91_04220)	pilA	948749..949168 (+)	420	WP_047229858.1	pilin	Machinery gene
PSH91_RS04225 (PSH91_04225)	-	949449..949802 (+)	354	WP_047229857.1	BON domain-containing protein	-
PSH91_RS04230 (PSH91_04230)	-	950126..950422 (-)	297	WP_047229856.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31869.04 Da
• Isoelectric Point: 8.0377

>NTDB_id=785830 PSH91_RS04205 WP_047229861.1 944732..945601(-) (pilD) [Pseudomonas sp. FP1154]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWYFGFGWQAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS

Nucleotide

• Length: 870 bp

>NTDB_id=785830 PSH91_RS04205 WP_047229861.1 944732..945601(-) (pilD) [Pseudomonas sp. FP1154]
ATGCCCCTGACCGAATTTTTCGCGCTGTATCCCCTGGCCTTTGTGCTCGCCGCTTTACTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTAGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAACATTCCGCTATTGAGTTACCTGGCATTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
CTATCCCCTGACCGAACTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGTATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTGACCTGGGGCCTACTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGTTGCCCGACACCCTGGTG
CTGCCATTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGCTTGTTCGTCCCCTTGAATCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCTCCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Acinetobacter nosocomialis M2	48.905	94.81	0.464