Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   PND17_RS05485 Genome accession   NZ_CP116772
Coordinates   1036571..1037068 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031571..1042068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS05465 (PND17_05465) - 1031618..1033222 (-) 1605 WP_002949230.1 CTP synthase -
  PND17_RS05470 (PND17_05470) rpoE 1033473..1034048 (-) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  PND17_RS05475 (PND17_05475) tig 1034206..1035489 (-) 1284 WP_011680653.1 trigger factor -
  PND17_RS05480 (PND17_05480) - 1035629..1036471 (+) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  PND17_RS05485 (PND17_05485) comX 1036571..1037068 (-) 498 WP_002949220.1 sigma factor Regulator
  PND17_RS05490 (PND17_05490) - 1037360..1037464 (-) 105 Protein_1081 IS200/IS605 family transposase -
  PND17_RS05495 (PND17_05495) - 1037749..1038003 (-) 255 Protein_1082 transposase -
  PND17_RS05500 (PND17_05500) - 1038281..1038793 (+) 513 WP_002951148.1 GNAT family N-acetyltransferase -
  PND17_RS05505 (PND17_05505) - 1039154..1040230 (+) 1077 WP_065973323.1 aspartate-semialdehyde dehydrogenase -
  PND17_RS05510 (PND17_05510) dapA 1040568..1041503 (+) 936 WP_271298304.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=780049 PND17_RS05485 WP_002949220.1 1036571..1037068(-) (comX) [Streptococcus thermophilus strain strain TSGB 4141]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=780049 PND17_RS05485 WP_002949220.1 1036571..1037068(-) (comX) [Streptococcus thermophilus strain strain TSGB 4141]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGAGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HKA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.