Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   PND17_RS04585 Genome accession   NZ_CP116772
Coordinates   860581..861522 (+) Length   313 a.a.
NCBI ID   WP_022096896.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855581..866522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS04575 (PND17_04575) rpoC 856341..859979 (+) 3639 WP_173940671.1 DNA-directed RNA polymerase subunit beta' -
  PND17_RS04580 (PND17_04580) - 860138..860500 (+) 363 WP_087010198.1 DUF1033 family protein -
  PND17_RS04585 (PND17_04585) comGA/cglA/cilD 860581..861522 (+) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  PND17_RS04590 (PND17_04590) comYB 861404..862504 (+) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  PND17_RS04595 (PND17_04595) comYC 862501..862827 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  PND17_RS04600 (PND17_04600) comYD 862787..863215 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  PND17_RS04605 (PND17_04605) comGE 863187..863480 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  PND17_RS04610 (PND17_04610) comYF 863464..863901 (+) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PND17_RS04615 (PND17_04615) comGG 863879..864196 (+) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  PND17_RS04620 (PND17_04620) comYH 864241..865197 (+) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  PND17_RS04625 (PND17_04625) - 865253..866446 (+) 1194 WP_271298286.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35409.56 Da        Isoelectric Point: 6.3927

>NTDB_id=780036 PND17_RS04585 WP_022096896.1 860581..861522(+) (comGA/cglA/cilD) [Streptococcus thermophilus strain strain TSGB 4141]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGHLVSLRLSTVGDYRGLESLVIRILHSERRELVYWNQGIQPIKDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDSLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSIAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFARENFQNHSSTNWNQQLEGLVKQGCLTERDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=780036 PND17_RS04585 WP_022096896.1 860581..861522(+) (comGA/cglA/cilD) [Streptococcus thermophilus strain strain TSGB 4141]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTATGAGCTCTATATGCGAGTCGGGCAAGAGAGGAGATTGATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTGGGTTCATGTGACTATGAT
TGTGGTGACGGTCACTTGGTTTCTCTGCGTTTATCAACTGTTGGAGACTATCGAGGTTTGGAGAGCTTGGTTATCCGTAT
CCTACATTCCGAACGTCGAGAATTAGTGTATTGGAATCAAGGAATCCAGCCTATTAAGGATGCCTTGGATTATAGAGGAC
TGTATCTCTTTGCGGGTCCCGTAGGTTCTGGGAAGACCACACTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTAATTTCTATTGAGGATCCTGTTGAAATCAAACAGGATAATGTCTTGCAACTCCAGGTTAATCAGGCGATTGATAT
GACCTATGATAGTTTGATTAAGCTATCTCTACGTCACCGTCCAGATGTTTTGATTATTGGGGAGATTCGGGATAAGGAGA
CTGCCCGGGCAGTTATTAGAGCTAGTCTAACAGGTGTAACTGTTCTCTCAACTATTCATGCTAAGAGTATTGCTGGCGTT
TACGAACGTCTCTTGGACCTTGGTGTAGATAAGTCTGAGTTGGATAATGCTCTACAAGGCATTGCCTACATGCGTTTGAT
CAAGGGAGGAGGTGTGATTGATTTTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATGTCTCACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.595

99.361

0.652
  comYA Streptococcus mutans UA159

64.856

100

0.649
  comYA Streptococcus mutans UA140

64.856

100

0.649
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.309

99.361

0.639
  comYA Streptococcus gordonii str. Challis substr. CH1

63.259

100

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.538

99.681

0.613
  comGA Lactococcus lactis subsp. cremoris KW2

51.125

99.361

0.508
  comGA Latilactobacillus sakei subsp. sakei 23K

38.816

97.125

0.377