Detailed information NTG0780039

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: PND17_RS04600
• Genome accession: NZ_CP116772
• Coordinates: 862787..863215 (+)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain strain TSGB 4141
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 857787..868215

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PND17_RS04580 (PND17_04580)	-	860138..860500 (+)	363	WP_087010198.1	DUF1033 family protein	-
PND17_RS04585 (PND17_04585)	comGA/cglA/cilD	860581..861522 (+)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
PND17_RS04590 (PND17_04590)	comYB	861404..862504 (+)	1101	WP_157659050.1	competence type IV pilus assembly protein ComGB	Machinery gene
PND17_RS04595 (PND17_04595)	comYC	862501..862827 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
PND17_RS04600 (PND17_04600)	comYD	862787..863215 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
PND17_RS04605 (PND17_04605)	comGE	863187..863480 (+)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
PND17_RS04610 (PND17_04610)	comYF	863464..863901 (+)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
PND17_RS04615 (PND17_04615)	comGG	863879..864196 (+)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
PND17_RS04620 (PND17_04620)	comYH	864241..865197 (+)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
PND17_RS04625 (PND17_04625)	-	865253..866446 (+)	1194	WP_271298286.1	acetate kinase	-
PND17_RS04630 (PND17_04630)	-	866695..866892 (+)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
PND17_RS04635 (PND17_04635)	-	867135..867560 (+)	426	WP_271298285.1	CPBP family intramembrane glutamic endopeptidase	-
PND17_RS04640 (PND17_04640)	-	867634..868077 (+)	444	WP_002946118.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=780039 PND17_RS04600 WP_011226626.1 862787..863215(+) (comYD) [Streptococcus thermophilus strain strain TSGB 4141]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=780039 PND17_RS04600 WP_011226626.1 862787..863215(+) (comYD) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38