Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PND17_RS04620 Genome accession   NZ_CP116772
Coordinates   864241..865197 (+) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859241..870197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS04580 (PND17_04580) - 860138..860500 (+) 363 WP_087010198.1 DUF1033 family protein -
  PND17_RS04585 (PND17_04585) comGA/cglA/cilD 860581..861522 (+) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  PND17_RS04590 (PND17_04590) comYB 861404..862504 (+) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  PND17_RS04595 (PND17_04595) comYC 862501..862827 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  PND17_RS04600 (PND17_04600) comYD 862787..863215 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  PND17_RS04605 (PND17_04605) comGE 863187..863480 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  PND17_RS04610 (PND17_04610) comYF 863464..863901 (+) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PND17_RS04615 (PND17_04615) comGG 863879..864196 (+) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  PND17_RS04620 (PND17_04620) comYH 864241..865197 (+) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  PND17_RS04625 (PND17_04625) - 865253..866446 (+) 1194 WP_271298286.1 acetate kinase -
  PND17_RS04630 (PND17_04630) - 866695..866892 (+) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  PND17_RS04635 (PND17_04635) - 867135..867560 (+) 426 WP_271298285.1 CPBP family intramembrane glutamic endopeptidase -
  PND17_RS04640 (PND17_04640) - 867634..868077 (+) 444 WP_002946118.1 hypothetical protein -
  PND17_RS04645 (PND17_04645) - 868180..868842 (+) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  PND17_RS04650 (PND17_04650) proC 868872..869642 (-) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=780041 PND17_RS04620 WP_011226622.1 864241..865197(+) (comYH) [Streptococcus thermophilus strain strain TSGB 4141]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=780041 PND17_RS04620 WP_011226622.1 864241..865197(+) (comYH) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGTCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682