Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   O1Q77_RS07075 Genome accession   NZ_CP114182
Coordinates   1527258..1528397 (-) Length   379 a.a.
NCBI ID   WP_236370620.1    Uniprot ID   -
Organism   Aeromonas veronii strain AS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522258..1533397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q77_RS07055 (O1Q77_07055) oppF 1523007..1524002 (+) 996 WP_005337666.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  O1Q77_RS07060 (O1Q77_07060) - 1524305..1525249 (+) 945 WP_111899517.1 TerC family protein -
  O1Q77_RS07065 (O1Q77_07065) alr 1525315..1526541 (-) 1227 WP_149152580.1 alanine racemase -
  O1Q77_RS07070 (O1Q77_07070) - 1526715..1527164 (+) 450 WP_069529813.1 isoprenylcysteine carboxylmethyltransferase family protein -
  O1Q77_RS07075 (O1Q77_07075) pilU 1527258..1528397 (-) 1140 WP_236370620.1 type IVa pilus ATPase TapW Machinery gene
  O1Q77_RS07080 (O1Q77_07080) - 1528456..1528812 (-) 357 WP_005353120.1 DMT family protein -
  O1Q77_RS07085 (O1Q77_07085) - 1528925..1529656 (+) 732 WP_216961916.1 ABC transporter substrate-binding protein -
  O1Q77_RS07090 (O1Q77_07090) btuC 1529754..1530761 (+) 1008 WP_216961918.1 vitamin B12 ABC transporter permease BtuC -
  O1Q77_RS07095 (O1Q77_07095) - 1530827..1531624 (+) 798 WP_216963807.1 ATP-binding cassette domain-containing protein -
  O1Q77_RS07100 (O1Q77_07100) aac(6') 1531647..1532105 (-) 459 WP_304520740.1 aminoglycoside 6'-N-acetyltransferase -
  O1Q77_RS07105 (O1Q77_07105) - 1532112..1533176 (-) 1065 WP_213386391.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42267.37 Da        Isoelectric Point: 6.6014

>NTDB_id=764838 O1Q77_RS07075 WP_236370620.1 1527258..1528397(-) (pilU) [Aeromonas veronii strain AS1]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLNETPLEPGEVARIAAEIMDGEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIEEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKGDFF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=764838 O1Q77_RS07075 WP_236370620.1 1527258..1528397(-) (pilU) [Aeromonas veronii strain AS1]
ATGGAATTGCGAGACATGTTACAGATCCTGGCCAAGCAGGATGGCTCAGACCTCTATCTGTCGACCGGCGCGCCCCCCTG
CGCCAAGTTTAACGGCGGCCTGCGCCCCCTCAACGAAACGCCGCTGGAGCCGGGTGAAGTGGCGCGGATCGCCGCCGAGA
TCATGGATGGCGAGCAGAAGCAGCAGTTCGAGAAGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATCGGCCGC
TTTCGGGTCAACATCTTCAAGCAGCGCAACGAAGTCTCTCTGGTGGCCCGCAACATCAAGACCGAAATCCCCCGCTTTGA
AGATCTCAAACTCCCGCCTGTGCTGCTCGACACCATCATGGAGAAACGTGGCCTGGTGCTGTTTGTCGGCGGTACCGGCT
CGGGCAAATCCACTTCGCTGGCGGCGCTTATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTTCATCGCCACCGCAAGAGCATCATCAACCAGCGGGAAGTGGGCGTGGATACCCGCAGCTTCCACGC
CGCCCTGAAAAACACCCTGCGTCAGGCGCCGGACGTCATTCTTATCGGCGAGATCCGCGATCGCGAGACCATGGAACATG
CGCTGGCCTTCTCCGAAACCGGCCACCTTGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCCGAGGAGCGCCGCCCCCAGCTGCTCAACGACCTGGGCAACAACCTCAAGGCTTTTGTCTCCCAACG
GCTGGTGAAAACCACCGATGGCGGCCGCCGGGCCGCAGTGGAGATCATGCTCGGCACCCACACCATCCGCGACATGATCA
AGCGCGGCGAATTTGGCGGCCTCAAAGAGGTGATGGAAAAATCCAAGGCCCTCGGCATGGTTACCTTCGACAGTGCCCTG
TTTGATCTGGTGGTGGAAGGGGTGATTGAGGAAGAAGAGGCGGTGAAAAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGTTGTGGAAGGAGAAGGGGCAGATTGCCAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAACCCACCAAGGACG
AGAAGGGCGATTTTTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.474

100

0.546
  pilU Acinetobacter baylyi ADP1

53.239

93.668

0.499
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.888

89.446

0.375
  pilT Legionella pneumophila strain ERS1305867

42.515

88.127

0.375
  pilT Legionella pneumophila strain Lp02

42.515

88.127

0.375
  pilT Pseudomonas aeruginosa PAK

41.279

90.765

0.375
  pilT Pseudomonas stutzeri DSM 10701

40.698

90.765

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

87.863

0.367
  pilT Vibrio cholerae strain A1552

41.742

87.863

0.367
  pilT Acinetobacter baumannii strain A118

41.617

88.127

0.367
  pilT Acinetobacter baumannii D1279779

41.617

88.127

0.367
  pilT Acinetobacter nosocomialis M2

41.617

88.127

0.367