Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   OIY87_RS00705 Genome accession   NZ_CP113954
Coordinates   106938..107879 (+) Length   313 a.a.
NCBI ID   WP_257073582.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101938..112879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS00695 (OIY87_01990) rpoC 102689..106327 (+) 3639 WP_012961326.1 DNA-directed RNA polymerase subunit beta' -
  OIY87_RS00700 (OIY87_01995) - 106498..106866 (+) 369 WP_269725070.1 DUF1033 family protein -
  OIY87_RS00705 (OIY87_02000) comYA 106938..107879 (+) 942 WP_257073582.1 competence type IV pilus ATPase ComGA Machinery gene
  OIY87_RS00710 (OIY87_02005) comYB 107761..108846 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  OIY87_RS00715 (OIY87_02010) comYC 108846..109139 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  OIY87_RS00720 (OIY87_02015) comYD 109123..109554 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  OIY87_RS00725 (OIY87_02020) comGE 109508..109801 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  OIY87_RS00730 (OIY87_02025) comYF 109755..110222 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  OIY87_RS00735 (OIY87_02030) comYG 110194..110526 (+) 333 WP_420067733.1 competence type IV pilus minor pilin ComGG Machinery gene
  OIY87_RS00740 (OIY87_02035) comYH 110581..111537 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  OIY87_RS00745 (OIY87_02040) - 111590..112789 (+) 1200 WP_061458770.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35744.90 Da        Isoelectric Point: 5.3073

>NTDB_id=763795 OIY87_RS00705 WP_257073582.1 106938..107879(+) (comYA) [Streptococcus gallolyticus strain XH2168]
MIQEKAKQLIKDAVEVNAQDIYILPREDCYEVYQRVGDQRQFVDYFELEQMTSLISHFKFVAGMNVGEKRRSQLGSCDYQ
FADEEEISLRLSSVGDYRGRESLVIRLLYSGRHDLQYWFDGMKNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPDK
QVITIEDPVEIKQEQMLQLQLNSDIGMTYDELIKLSLRHRPDILIIGEIRDSETARAVIRASLTGAVVFSTIHAKSIPGV
YARLLELGVSKQELENSLRAIVYQRLIGGGGVIDFAKENFESHRPECWNTKIESLVKDGHITAEQAKIEKIAI

Nucleotide


Download         Length: 942 bp        

>NTDB_id=763795 OIY87_RS00705 WP_257073582.1 106938..107879(+) (comYA) [Streptococcus gallolyticus strain XH2168]
ATGATTCAGGAAAAAGCAAAGCAACTCATTAAGGATGCTGTTGAAGTTAATGCGCAAGATATTTACATTTTACCTAGAGA
AGACTGTTATGAAGTGTATCAACGCGTGGGAGACCAACGGCAATTTGTTGATTATTTTGAGCTAGAGCAGATGACTAGCT
TGATTAGTCATTTTAAATTTGTGGCTGGTATGAATGTTGGGGAGAAACGTCGCAGCCAGCTAGGTTCTTGTGATTATCAA
TTTGCAGATGAAGAGGAGATTTCGCTTCGTTTGTCGAGTGTTGGTGATTATCGTGGACGAGAAAGTTTAGTGATTCGCTT
GCTTTATTCTGGTCGTCATGATTTGCAATATTGGTTTGACGGGATGAAAAATATTTTAGAAGCCATTGATAGTAGGGGGC
TTTACCTTTTTTCGGGACCAGTAGGGAGTGGAAAAACCACTCTCATGTACCAATTGGTTCGTGAAAAATTTCCTGATAAG
CAAGTTATTACAATTGAGGACCCTGTTGAAATCAAACAGGAACAAATGTTGCAGTTGCAGTTAAATAGTGATATTGGGAT
GACTTATGACGAGCTGATTAAATTATCGCTTCGCCATAGACCAGATATTCTGATTATCGGAGAAATTCGTGATAGCGAGA
CAGCGCGTGCAGTTATTCGTGCGAGTTTGACGGGAGCTGTTGTATTTTCGACTATTCATGCGAAGAGCATCCCTGGCGTT
TACGCACGTCTTTTGGAATTAGGGGTTAGTAAGCAAGAATTGGAAAATAGTTTGCGTGCCATTGTTTATCAACGCTTAAT
TGGCGGAGGAGGTGTGATTGATTTTGCTAAAGAAAACTTTGAAAGTCACCGACCAGAGTGCTGGAATACAAAAATTGAAA
GTCTTGTTAAAGACGGACATATCACAGCTGAACAAGCAAAAATCGAAAAAATTGCCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

69.132

99.361

0.687
  comYA Streptococcus mutans UA140

68.81

99.361

0.684
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

67.742

99.042

0.671
  comYA Streptococcus gordonii str. Challis substr. CH1

65.595

99.361

0.652
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.821

99.681

0.626
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

62.5

99.681

0.623
  comGA/cglA/cilD Streptococcus pneumoniae D39

62.5

99.681

0.623
  comGA/cglA/cilD Streptococcus pneumoniae R6

62.5

99.681

0.623
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

62.5

99.681

0.623
  comGA Lactococcus lactis subsp. cremoris KW2

54.633

100

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

43.116

88.179

0.38