Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   OIY87_RS00735 Genome accession   NZ_CP113954
Coordinates   110194..110526 (+) Length   110 a.a.
NCBI ID   WP_420067733.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105194..115526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS00700 (OIY87_01995) - 106498..106866 (+) 369 WP_269725070.1 DUF1033 family protein -
  OIY87_RS00705 (OIY87_02000) comYA 106938..107879 (+) 942 WP_257073582.1 competence type IV pilus ATPase ComGA Machinery gene
  OIY87_RS00710 (OIY87_02005) comYB 107761..108846 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  OIY87_RS00715 (OIY87_02010) comYC 108846..109139 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  OIY87_RS00720 (OIY87_02015) comYD 109123..109554 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  OIY87_RS00725 (OIY87_02020) comGE 109508..109801 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  OIY87_RS00730 (OIY87_02025) comYF 109755..110222 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  OIY87_RS00735 (OIY87_02030) comYG 110194..110526 (+) 333 WP_420067733.1 competence type IV pilus minor pilin ComGG Machinery gene
  OIY87_RS00740 (OIY87_02035) comYH 110581..111537 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  OIY87_RS00745 (OIY87_02040) - 111590..112789 (+) 1200 WP_061458770.1 acetate kinase -
  OIY87_RS00750 (OIY87_02045) - 112951..113151 (+) 201 WP_269725072.1 helix-turn-helix transcriptional regulator -
  OIY87_RS00755 (OIY87_02050) - 113161..113391 (+) 231 WP_269725073.1 chaperone CbpA -
  OIY87_RS00760 (OIY87_02055) - 113382..113834 (+) 453 WP_061458772.1 hypothetical protein -
  OIY87_RS00765 (OIY87_02060) - 113846..114481 (+) 636 WP_269725074.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12585.63 Da        Isoelectric Point: 7.1983

>NTDB_id=763800 OIY87_RS00735 WP_420067733.1 110194..110526(+) (comYG) [Streptococcus gallolyticus strain XH2168]
MFTLLKRQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASLAYLMAELTKDLAKEDTGHLTFDQGVADYNF
QDNRLQVVVKLPNQQEFDYVFQSVQKEKAN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=763800 OIY87_RS00735 WP_420067733.1 110194..110526(+) (comYG) [Streptococcus gallolyticus strain XH2168]
TTGTTTACACTTTTGAAACGGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGCAGCAATTTTTGCCTTGCT
TTTACAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACACCAAGCGCAGCTATCTGCTAGTCTGGCTTATTTAA
TGGCAGAATTAACAAAAGATTTGGCAAAAGAGGATACTGGTCACCTTACATTTGACCAAGGAGTAGCTGACTACAACTTC
CAAGATAATCGATTGCAGGTGGTGGTCAAACTGCCTAATCAACAAGAATTTGACTATGTTTTCCAAAGTGTTCAGAAAGA
GAAAGCTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

54.286

95.455

0.518
  comYG Streptococcus mutans UA159

54.286

95.455

0.518
  comGG/cglG Streptococcus mitis NCTC 12261

40.404

90

0.364