Detailed information NTG0763798

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: OIY87_RS00720
• Genome accession: NZ_CP113954
• Coordinates: 109123..109554 (+)
• Length: 143 a.a.
• NCBI ID: WP_009853232.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus strain XH2168
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 104123..114554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIY87_RS00700 (OIY87_01995)	-	106498..106866 (+)	369	WP_269725070.1	DUF1033 family protein	-
OIY87_RS00705 (OIY87_02000)	comYA	106938..107879 (+)	942	WP_257073582.1	competence type IV pilus ATPase ComGA	Machinery gene
OIY87_RS00710 (OIY87_02005)	comYB	107761..108846 (+)	1086	WP_012961328.1	competence type IV pilus assembly protein ComGB	Machinery gene
OIY87_RS00715 (OIY87_02010)	comYC	108846..109139 (+)	294	WP_009853231.1	competence type IV pilus major pilin ComGC	Machinery gene
OIY87_RS00720 (OIY87_02015)	comYD	109123..109554 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
OIY87_RS00725 (OIY87_02020)	comGE	109508..109801 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
OIY87_RS00730 (OIY87_02025)	comYF	109755..110222 (+)	468	WP_012961330.1	competence type IV pilus minor pilin ComGF	Machinery gene
OIY87_RS00735 (OIY87_02030)	comYG	110194..110526 (+)	333	WP_420067733.1	competence type IV pilus minor pilin ComGG	Machinery gene
OIY87_RS00740 (OIY87_02035)	comYH	110581..111537 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
OIY87_RS00745 (OIY87_02040)	-	111590..112789 (+)	1200	WP_061458770.1	acetate kinase	-
OIY87_RS00750 (OIY87_02045)	-	112951..113151 (+)	201	WP_269725072.1	helix-turn-helix transcriptional regulator	-
OIY87_RS00755 (OIY87_02050)	-	113161..113391 (+)	231	WP_269725073.1	chaperone CbpA	-
OIY87_RS00760 (OIY87_02055)	-	113382..113834 (+)	453	WP_061458772.1	hypothetical protein	-
OIY87_RS00765 (OIY87_02060)	-	113846..114481 (+)	636	WP_269725074.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 15983.37 Da
• Isoelectric Point: 8.9601

>NTDB_id=763798 OIY87_RS00720 WP_009853232.1 109123..109554(+) (comYD) [Streptococcus gallolyticus strain XH2168]
MKLKNKTVSAFTLLESLLTLGISCFIIMMLSGSLNGIFQNVEEKIFFLSFENLYCDTQKLANARQQSLTLTVSQEEVSTD
FSTVKLPPSVKVDKTYQVNFDKAGGNSSLAKLTFQTSDKEVNYQLYLGSGKYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=763798 OIY87_RS00720 WP_009853232.1 109123..109554(+) (comYD) [Streptococcus gallolyticus strain XH2168]
ATGAAGCTAAAAAATAAAACAGTTTCAGCTTTTACCCTTTTAGAAAGTTTATTAACACTAGGAATTTCCTGTTTTATTAT
CATGATGTTATCAGGCTCTTTGAATGGTATTTTTCAAAATGTGGAAGAAAAGATTTTCTTTTTATCGTTTGAAAATCTCT
ATTGTGACACGCAAAAATTAGCTAATGCTAGGCAACAAAGTCTTACGTTGACTGTTTCGCAAGAGGAAGTGTCAACTGAT
TTTTCAACTGTAAAACTCCCTCCGTCGGTCAAAGTAGATAAAACTTATCAAGTCAATTTCGACAAAGCAGGAGGCAATTC
GTCCTTGGCAAAATTAACCTTTCAAACGTCAGATAAAGAGGTCAACTATCAATTATATTTAGGGAGTGGTAAATATAAAA
AGACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.198	91.608	0.496
comYD	Streptococcus mutans UA159	54.198	91.608	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	45.926	94.406	0.434
comGD/cglD	Streptococcus pneumoniae Rx1	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae D39	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae R6	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae TIGR4	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis NCTC 12261	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis SK321	45.455	92.308	0.42