Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   OIY87_RS00740 Genome accession   NZ_CP113954
Coordinates   110581..111537 (+) Length   318 a.a.
NCBI ID   WP_009853236.1    Uniprot ID   A0A139R3Z2
Organism   Streptococcus gallolyticus strain XH2168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105581..116537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS00700 (OIY87_01995) - 106498..106866 (+) 369 WP_269725070.1 DUF1033 family protein -
  OIY87_RS00705 (OIY87_02000) comYA 106938..107879 (+) 942 WP_257073582.1 competence type IV pilus ATPase ComGA Machinery gene
  OIY87_RS00710 (OIY87_02005) comYB 107761..108846 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  OIY87_RS00715 (OIY87_02010) comYC 108846..109139 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  OIY87_RS00720 (OIY87_02015) comYD 109123..109554 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  OIY87_RS00725 (OIY87_02020) comGE 109508..109801 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  OIY87_RS00730 (OIY87_02025) comYF 109755..110222 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  OIY87_RS00735 (OIY87_02030) comYG 110194..110526 (+) 333 WP_420067733.1 competence type IV pilus minor pilin ComGG Machinery gene
  OIY87_RS00740 (OIY87_02035) comYH 110581..111537 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  OIY87_RS00745 (OIY87_02040) - 111590..112789 (+) 1200 WP_061458770.1 acetate kinase -
  OIY87_RS00750 (OIY87_02045) - 112951..113151 (+) 201 WP_269725072.1 helix-turn-helix transcriptional regulator -
  OIY87_RS00755 (OIY87_02050) - 113161..113391 (+) 231 WP_269725073.1 chaperone CbpA -
  OIY87_RS00760 (OIY87_02055) - 113382..113834 (+) 453 WP_061458772.1 hypothetical protein -
  OIY87_RS00765 (OIY87_02060) - 113846..114481 (+) 636 WP_269725074.1 CPBP family intramembrane glutamic endopeptidase -
  OIY87_RS00770 (OIY87_02065) comR 114660..115562 (+) 903 WP_269725075.1 helix-turn-helix domain-containing protein Regulator

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36027.96 Da        Isoelectric Point: 4.4127

>NTDB_id=763801 OIY87_RS00740 WP_009853236.1 110581..111537(+) (comYH) [Streptococcus gallolyticus strain XH2168]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAHTPETFVYPLSDLQSREALTDFIRKFQKWKVDNMNF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=763801 OIY87_RS00740 WP_009853236.1 110581..111537(+) (comYH) [Streptococcus gallolyticus strain XH2168]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAATTCTTTTTACTTGGGGGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAGCTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGATCTTTTAGAAATTGGTAGTGGGACAGGAAACCTTGCTCAAACATTGTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTATTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCAGTTTATTCAAGAAGATGCTGTACGTCCACAAATTCTGAAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGACATTGCCAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCTGTCAGTCTTTTGACAAGTAAGCAA
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACCTTGCCAGAATCTATTTTTGGTAA
TGCAGCGAATGCAAAATCAATTTTTGTTTTGAAAAAACAGGCTGCGCATACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAGCTCTGACTGATTTCATTAGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(71-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139R3Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

68.987

99.371

0.686
  comYH Streptococcus mutans UA159

68.671

99.371

0.682