Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QMZ13_RS05115 Genome accession   NZ_CP125741
Coordinates   954518..955525 (+) Length   335 a.a.
NCBI ID   WP_002859650.1    Uniprot ID   Q5HT48
Organism   Campylobacter jejuni strain MS2212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949518..960525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS05100 (QMZ13_05095) - 951177..953467 (-) 2291 Protein_986 autotransporter outer membrane beta-barrel domain-containing protein -
  QMZ13_RS05110 (QMZ13_05105) - 954017..954427 (-) 411 WP_002783915.1 hypothetical protein -
  QMZ13_RS05115 (QMZ13_05110) ruvB 954518..955525 (+) 1008 WP_002859650.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QMZ13_RS05120 (QMZ13_05115) amaA 955529..956572 (+) 1044 WP_002869561.1 AI-2E family transporter -
  QMZ13_RS05125 (QMZ13_05120) fumC 956602..957993 (-) 1392 WP_002859652.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37295.85 Da        Isoelectric Point: 4.9081

>NTDB_id=763796 QMZ13_RS05115 WP_002859650.1 954518..955525(+) (ruvB) [Campylobacter jejuni strain MS2212]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=763796 QMZ13_RS05115 WP_002859650.1 954518..955525(+) (ruvB) [Campylobacter jejuni strain MS2212]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATTGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGAGCTACAACGCGT
GCAGGTATGCTTAGTAATCCTTTGCGAGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGAGTGAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCTAAACAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HT48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae R6

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae D39

48.632

98.209

0.478
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475