Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   OIY87_RS00710 Genome accession   NZ_CP113954
Coordinates   107761..108846 (+) Length   361 a.a.
NCBI ID   WP_012961328.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102761..113846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS00700 (OIY87_01995) - 106498..106866 (+) 369 WP_269725070.1 DUF1033 family protein -
  OIY87_RS00705 (OIY87_02000) comYA 106938..107879 (+) 942 WP_257073582.1 competence type IV pilus ATPase ComGA Machinery gene
  OIY87_RS00710 (OIY87_02005) comYB 107761..108846 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  OIY87_RS00715 (OIY87_02010) comYC 108846..109139 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  OIY87_RS00720 (OIY87_02015) comYD 109123..109554 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  OIY87_RS00725 (OIY87_02020) comGE 109508..109801 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  OIY87_RS00730 (OIY87_02025) comYF 109755..110222 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  OIY87_RS00735 (OIY87_02030) comYG 110194..110526 (+) 333 WP_420067733.1 competence type IV pilus minor pilin ComGG Machinery gene
  OIY87_RS00740 (OIY87_02035) comYH 110581..111537 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  OIY87_RS00745 (OIY87_02040) - 111590..112789 (+) 1200 WP_061458770.1 acetate kinase -
  OIY87_RS00750 (OIY87_02045) - 112951..113151 (+) 201 WP_269725072.1 helix-turn-helix transcriptional regulator -
  OIY87_RS00755 (OIY87_02050) - 113161..113391 (+) 231 WP_269725073.1 chaperone CbpA -
  OIY87_RS00760 (OIY87_02055) - 113382..113834 (+) 453 WP_061458772.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41149.94 Da        Isoelectric Point: 9.9289

>NTDB_id=763796 OIY87_RS00710 WP_012961328.1 107761..108846(+) (comYB) [Streptococcus gallolyticus strain XH2168]
MLKKTLKVTDQSAGIQKLKVLLKTDISQLNKQKSKKLPFKKQRKVIQLFNNLFESGFNLTEIVSFLRRSQLLLDIYVERM
QESLLNGASLATMMADLGFSDNIVTQIALADVHGNSQKSLLKIESYLSSMTVVRKKLIEVATYPLILLLFLILIMLGLKN
YLLPQLESQNVATQIITHFPTIFLLSIFSIGVLLVCATFYARRLSQIDLYSRISRIPLVGNYVRLYLTAYYAREWGNLIG
QGIELMAIVGIMQKQKSLLFQEIGKDMEEALLSGQAFHQKVLGYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQSFF
GKLTQATQLIQPLVFVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=763796 OIY87_RS00710 WP_012961328.1 107761..108846(+) (comYB) [Streptococcus gallolyticus strain XH2168]
TTGCTAAAGAAAACTTTGAAAGTCACCGACCAGAGTGCTGGAATACAAAAATTGAAAGTCTTGTTAAAGACGGACATATC
ACAGCTGAACAAGCAAAAATCGAAAAAATTGCCATTTAAAAAACAGCGCAAGGTTATTCAACTCTTTAATAATCTTTTTG
AAAGTGGGTTTAATTTAACAGAAATCGTGTCTTTTCTCCGAAGAAGTCAATTGTTGTTAGACATTTATGTTGAGAGGATG
CAAGAAAGTTTGTTAAATGGTGCTAGCCTAGCAACAATGATGGCAGATTTAGGGTTTTCAGACAATATTGTCACACAAAT
TGCTTTGGCTGATGTTCATGGAAACAGTCAGAAAAGTCTGCTGAAGATTGAGTCTTACCTTTCTAGCATGACTGTCGTCA
GAAAAAAGTTAATTGAAGTTGCAACGTATCCATTGATTTTGTTGTTGTTTCTTATTTTGATTATGCTGGGGTTGAAGAAT
TATCTACTGCCACAGTTGGAAAGCCAAAATGTGGCAACGCAGATTATTACGCATTTTCCAACGATTTTTTTGCTAAGTAT
TTTCTCGATTGGAGTGTTGCTTGTTTGTGCGACATTTTATGCTAGGCGTTTATCGCAGATTGATTTATATAGTCGAATAA
GCCGGATTCCACTTGTGGGAAACTATGTTAGGTTATATTTGACAGCTTACTATGCGCGTGAATGGGGAAATTTGATTGGG
CAAGGTATTGAATTAATGGCAATCGTGGGAATCATGCAAAAGCAAAAGTCGCTCTTATTTCAAGAGATTGGAAAGGATAT
GGAAGAAGCGTTGCTTTCAGGGCAAGCTTTTCATCAAAAAGTTCTGGGCTATCCATTCTTTTTGCGAGAATTGAGCCTAA
TGATTGAATATGGTGAGGTCAAATCGAAGCTGGGACGTGAGTTAGACATTTATGCTGAGGAAACATGGCAGAGCTTCTTT
GGCAAATTGACTCAAGCAACACAGCTCATTCAACCACTTGTTTTTGTTTTTGTGGCTTTGATTATTGTGTTAATTTATGT
GGCAATGTTGTTGCCAATGTATCAAAATATGGGAGGAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(232-352)

Type II secretion system (T2SS), protein F (T2SSF)

(47-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

66.772

87.535

0.584
  comYB Streptococcus mutans UA159

66.456

87.535

0.582
  comGB/cglB Streptococcus mitis NCTC 12261

60.472

93.906

0.568
  comYB Streptococcus gordonii str. Challis substr. CH1

60.417

93.075

0.562
  comGB/cglB Streptococcus mitis SK321

57.864

93.352

0.54
  comGB/cglB Streptococcus pneumoniae Rx1

56.973

93.352

0.532
  comGB/cglB Streptococcus pneumoniae D39

56.973

93.352

0.532
  comGB/cglB Streptococcus pneumoniae R6

56.973

93.352

0.532
  comGB/cglB Streptococcus pneumoniae TIGR4

56.973

93.352

0.532
  comGB Lactococcus lactis subsp. cremoris KW2

50.292

94.737

0.476