Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   OOT43_RS01375 Genome accession   NZ_CP110921
Coordinates   274136..274549 (+) Length   137 a.a.
NCBI ID   WP_266022861.1    Uniprot ID   -
Organism   Methylococcus mesophilus strain 16-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269136..279549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT43_RS01365 (OOT43_01365) - 269910..270608 (+) 699 WP_266022859.1 glycosyltransferase -
  OOT43_RS01370 (OOT43_01370) - 270640..274032 (+) 3393 WP_266022860.1 tetratricopeptide repeat protein -
  OOT43_RS01375 (OOT43_01375) comP 274136..274549 (+) 414 WP_266022861.1 pilin Machinery gene
  OOT43_RS01380 (OOT43_01380) - 274596..276644 (-) 2049 WP_266022863.1 tetratricopeptide repeat protein -
  OOT43_RS01385 (OOT43_01385) - 276702..277406 (-) 705 WP_266022864.1 hypothetical protein -
  OOT43_RS01390 (OOT43_01390) - 277575..278399 (-) 825 WP_266022865.1 glycosyltransferase family 2 protein -
  OOT43_RS01395 (OOT43_01395) - 278649..279173 (-) 525 WP_266022866.1 hypothetical protein -
  OOT43_RS01400 (OOT43_01400) - 279170..279469 (-) 300 WP_266022867.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 13867.00 Da        Isoelectric Point: 8.4953

>NTDB_id=756931 OOT43_RS01375 WP_266022861.1 274136..274549(+) (comP) [Methylococcus mesophilus strain 16-5]
MKAVQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVSELLLTASKFRTDVTEKCQIDGGCANAGTGLSVGLGGKIT
SGSVAANGQITIGGNTTSASVGADVTIVLTPSWNSALGSAVWSCTGTPSRYVPGSCR

Nucleotide


Download         Length: 414 bp        

>NTDB_id=756931 OOT43_RS01375 WP_266022861.1 274136..274549(+) (comP) [Methylococcus mesophilus strain 16-5]
ATGAAAGCGGTACAAAAAGGTTTTACATTGATCGAACTCATGATCGTGGTGGCGATCATCGGCATTCTCGCTGCGGTCGC
TTTGCCAGCCTATCAGGATTACACCGTTCGAGCTAAGGTTTCCGAGCTTCTTCTTACCGCCAGTAAGTTCAGAACGGATG
TGACTGAAAAATGTCAGATTGACGGCGGCTGCGCCAACGCTGGGACAGGCTTGTCTGTTGGTCTTGGGGGGAAAATTACT
TCAGGTAGCGTTGCAGCTAATGGGCAGATCACTATCGGAGGAAATACAACATCGGCCAGCGTAGGCGCGGACGTCACTAT
CGTACTTACCCCAAGCTGGAATTCGGCACTGGGGTCGGCTGTTTGGTCATGCACTGGAACACCTTCCAGGTATGTCCCTG
GTTCTTGCCGATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

46.309

100

0.504
  pilA2 Legionella pneumophila str. Paris

48.551

100

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

39.881

100

0.489
  pilA2 Legionella pneumophila strain ERS1305867

47.826

100

0.482
  pilE Neisseria gonorrhoeae strain FA1090

37.349

100

0.453
  pilE Neisseria gonorrhoeae MS11

37.037

100

0.438
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.816

100

0.438
  pilA/pilA1 Eikenella corrodens VA1

38.158

100

0.423
  pilA Haemophilus influenzae Rd KW20

39.161

100

0.409
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.842

100

0.409
  pilA Pseudomonas aeruginosa PAK

36.667

100

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

40

98.54

0.394
  pilA Haemophilus influenzae 86-028NP

37.762

100

0.394