Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA52_RS23245 Genome accession   NZ_CP110347
Coordinates   5040510..5040959 (-) Length   149 a.a.
NCBI ID   WP_003112842.1    Uniprot ID   P04739
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5035510..5045959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS23225 (PALA52_04612) ampD 5036202..5036768 (-) 567 WP_024914671.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PALA52_RS23230 (PALA52_04613) - 5036919..5039174 (-) 2256 WP_263957286.1 DUF1631 domain-containing protein -
  PALA52_RS23235 (PALA52_04614) nadC 5039460..5040308 (+) 849 WP_058141272.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PALA52_RS23245 pilA 5040510..5040959 (-) 450 WP_003112842.1 type 4a pilus biogenesis protein PilA Machinery gene
  PALA52_RS23250 (PALA52_04616) pilB 5041192..5042892 (+) 1701 WP_024914668.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PALA52_RS23255 (PALA52_04617) pilC 5042896..5044116 (+) 1221 WP_024914667.1 type 4a pilus biogenesis protein PilC Machinery gene
  PALA52_RS23260 (PALA52_04618) pilD 5044120..5044992 (+) 873 WP_003125204.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PALA52_RS23265 (PALA52_04619) coaE 5044989..5045600 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PALA52_RS23270 (PALA52_04620) yacG 5045597..5045797 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15511.78 Da        Isoelectric Point: 6.2905

>NTDB_id=754272 PALA52_RS23245 WP_003112842.1 5040510..5040959(-) (pilA) [Pseudomonas aeruginosa strain PALA52]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKIKIGTTASTATETYV
GVEPDANKLGVIAVAIEDSGAGDITFTFQTGTSSPKNATKVITLNRTADGVWACKSTQDPMFTPKGCDN

Nucleotide


Download         Length: 450 bp        

>NTDB_id=754272 PALA52_RS23245 WP_003112842.1 5040510..5040959(-) (pilA) [Pseudomonas aeruginosa strain PALA52]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCAATTGCCAT
TCCCCAGTACCAGAACTATGTAGCGCGTTCGGAAGGTGCTTCGGCGCTGGCGACGATCAACCCGTTGAAGACCACTGTTG
AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGCAAAATTAAAATTGGTACTACTGCTTCTACTGCGACCGAAACATATGTC
GGCGTCGAGCCGGATGCCAACAAGTTGGGTGTAATTGCTGTAGCAATCGAAGATAGCGGTGCGGGTGATATTACCTTTAC
CTTCCAGACTGGTACCTCTAGTCCCAAGAATGCTACTAAAGTTATCACTCTGAACCGTACTGCGGATGGGGTCTGGGCTT
GTAAATCTACCCAGGATCCGATGTTCACTCCGAAAGGTTGTGATAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1PAN
  PDB 1PAO
  PDB 8TUM
  PDB 8TUW
  PDB 9EWX

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

67.785

100

0.678
  pilA Acinetobacter baumannii strain A118

48

100

0.483
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

48.322

100

0.483
  pilA Vibrio cholerae strain A1552

48.322

100

0.483
  pilA Vibrio cholerae C6706

48.322

100

0.483
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.638

100

0.456
  pilA Vibrio parahaemolyticus RIMD 2210633

44.898

98.658

0.443
  comP Acinetobacter baylyi ADP1

41.83

100

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.056

95.973

0.423
  pilA2 Legionella pneumophila str. Paris

38.776

98.658

0.383
  pilA2 Legionella pneumophila strain ERS1305867

38.095

98.658

0.376