Detailed information NTG0733244

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: N7V09_RS17210
• Genome accession: NZ_CP104900
• Coordinates: 3838718..3839830 (-)
• Length: 370 a.a.
• NCBI ID: WP_011621983.1
• Uniprot ID: -
• Organism: Shewanella seohaensis strain KCTC 23556
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3833718..3844830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7V09_RS17175 (N7V09_17175)	-	3834273..3834833 (-)	561	WP_011621990.1	DUF4136 domain-containing protein	-
N7V09_RS17180 (N7V09_17180)	-	3835013..3835327 (+)	315	WP_011716287.1	hypothetical protein	-
N7V09_RS17185 (N7V09_17185)	yciH	3835476..3835805 (+)	330	WP_011625632.1	stress response translation initiation inhibitor YciH	-
N7V09_RS17190 (N7V09_17190)	-	3835874..3836437 (+)	564	WP_011621987.1	YqgE/AlgH family protein	-
N7V09_RS17195 (N7V09_17195)	ruvX	3836468..3836893 (+)	426	WP_011621986.1	Holliday junction resolvase RuvX	-
N7V09_RS17200 (N7V09_17200)	hemH	3836955..3837938 (-)	984	WP_248967315.1	ferrochelatase	-
N7V09_RS17205 (N7V09_17205)	-	3838008..3838541 (-)	534	WP_248967410.1	glutathione peroxidase	-
N7V09_RS17210 (N7V09_17210)	pilU	3838718..3839830 (-)	1113	WP_011621983.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
N7V09_RS17215 (N7V09_17215)	pilT	3839840..3840877 (-)	1038	WP_011716282.1	type IV pilus twitching motility protein PilT	Machinery gene
N7V09_RS17220 (N7V09_17220)	-	3840913..3841629 (+)	717	WP_248967316.1	YggS family pyridoxal phosphate-dependent enzyme	-
N7V09_RS17225 (N7V09_17225)	proC	3841854..3842672 (+)	819	WP_086904529.1	pyrroline-5-carboxylate reductase	-
N7V09_RS17230 (N7V09_17230)	-	3842748..3843296 (+)	549	WP_248967317.1	YggT family protein	-
N7V09_RS17235 (N7V09_17235)	yggU	3843296..3843586 (+)	291	WP_011621978.1	DUF167 family protein YggU	-
N7V09_RS17240 (N7V09_17240)	-	3843655..3844089 (+)	435	WP_011621977.1	DUF4426 domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 41187.42 Da
• Isoelectric Point: 6.3725

>NTDB_id=733244 N7V09_RS17210 WP_011621983.1 3838718..3839830(-) (pilU) [Shewanella seohaensis strain KCTC 23556]
MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESVMTEAQKKEFHTTRECNFAFAVKDLGR
FRVSAFWQRESPGCVMRRIETKIPEVEDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNAHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLQLYIDGEISYADALHHADSPNDLRLMIKLQNKEPTSSSFMEGVTLDMD

Nucleotide

• Length: 1113 bp

>NTDB_id=733244 N7V09_RS17210 WP_011621983.1 3838718..3839830(-) (pilU) [Shewanella seohaensis strain KCTC 23556]
ATGGATGTCCGTCCGTTTTTAAAAGTCATGGTGGAGCGTAAAGCCTCGGACTTGTTTATTACCGCAGGGTTTCCGCCGAG
CGCCAAAATCGATGGTGAGTTACGCCCGTTAGCCGAGAGTGCCTTCACGCCCGCGCAGTCTTTGGATTTTGTCGAGTCCG
TGATGACCGAGGCACAAAAGAAGGAGTTTCACACCACTCGCGAGTGTAACTTCGCTTTTGCGGTTAAGGATTTAGGTCGT
TTCCGTGTTAGCGCATTCTGGCAGCGTGAATCTCCGGGATGCGTTATGCGCCGGATTGAGACCAAGATCCCTGAGGTAGA
AGACTTAAAATTGCCACCGATTTTAAAAGATCTGGTGATGAGTAAACGTGGTCTTATCATCATGGTTGGGGGAACGGGAA
CCGGTAAGTCGACCTCCTTGGCGGCGTTAGTGGGTTATCGTAATGCCCATGCCCGTGGTCACATCCTCACCATCGAAGAC
CCGGTGGAATTTGTGCACGACCATCGCAAAAGCATCATTACTCAACGTGAAGTGGGTATAGATACAGAATCCTTTGATGC
GGCGCTGAAGAGTTCGCTGCGTCAAGCACCCGATGTGATTTTGATTGGCGAGATCCGTACTCAAGAAACCATGGAGTTTG
CGCTTTCTTTCGCCGAAACGGGTCACCTCTGTATGGCGACACTGCACGCGAACAACGCTAACCAAGCGTTAGATCGGATC
ATGCACTTAGTACCGGAGAGTAAACACCAGCAGTTGCTATTCGACTTGTCACTCAACCTGCGTGGCATTGTGGCGCAGCA
ACTGGTGCCCAAAGTCGATGGCACAGGACGACGGGCGGCGATTGAAGTCTTGATCAATACGCCACGTGTCGCGAGCTTGA
TTGCTAAAAACGAGCTGCATTTGCTCAAAGAGACCATGGCCAAATCGAATGAACAGGGCATGCAGACCTTCGACCAAGCC
TTGCTGCAACTCTATATCGATGGGGAAATCAGCTATGCCGATGCGCTTCACCATGCTGACTCGCCAAACGACTTACGTTT
AATGATCAAACTGCAAAATAAAGAACCTACCAGTTCAAGCTTTATGGAAGGCGTGACCTTGGATATGGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.377	100	0.605
pilU	Vibrio cholerae strain A1552	59.189	100	0.592
pilU	Acinetobacter baylyi ADP1	60.511	95.135	0.576
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	43.333	89.189	0.386
pilT	Vibrio cholerae strain A1552	43.333	89.189	0.386
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.87	93.243	0.381
pilT	Acinetobacter nosocomialis M2	39.766	92.432	0.368
pilT	Acinetobacter baumannii D1279779	39.766	92.432	0.368
pilT	Acinetobacter baumannii strain A118	39.766	92.432	0.368
pilT	Acinetobacter baylyi ADP1	39.474	92.432	0.365
pilT	Legionella pneumophila strain Lp02	41.358	87.568	0.362
pilT	Legionella pneumophila strain ERS1305867	41.358	87.568	0.362