Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   NYR98_RS08230 Genome accession   NZ_CP103842
Coordinates   1985296..1985721 (+) Length   141 a.a.
NCBI ID   WP_168958950.1    Uniprot ID   A0A6V7CDJ8
Organism   Xanthomonas hortorum pv. pelargonii strain 22-324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980296..1990721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR98_RS08200 (NYR98_08210) - 1980394..1980885 (-) 492 WP_168958945.1 GNAT family N-acetyltransferase -
  NYR98_RS08205 (NYR98_08215) - 1980882..1981172 (-) 291 WP_168958946.1 DUF1778 domain-containing protein -
  NYR98_RS08210 (NYR98_08220) - 1981248..1981649 (-) 402 WP_168958947.1 SymE family type I addiction module toxin -
  NYR98_RS08215 (NYR98_08225) coaE 1982178..1982801 (-) 624 WP_168958948.1 dephospho-CoA kinase -
  NYR98_RS08220 (NYR98_08230) - 1982815..1983678 (-) 864 WP_016849610.1 A24 family peptidase -
  NYR98_RS08225 (NYR98_08235) pilC 1983685..1984944 (-) 1260 WP_168958949.1 type II secretion system F family protein Machinery gene
  NYR98_RS08230 (NYR98_08240) pilA2 1985296..1985721 (+) 426 WP_168958950.1 pilin Machinery gene
  NYR98_RS08235 (NYR98_08245) - 1985857..1987446 (+) 1590 WP_168958951.1 phosphoethanolamine transferase -
  NYR98_RS08240 (NYR98_08250) - 1987517..1988086 (+) 570 WP_233366553.1 hypothetical protein -
  NYR98_RS08245 - 1988056..1989592 (+) 1537 Protein_1616 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14385.63 Da        Isoelectric Point: 9.0171

>NTDB_id=725913 NYR98_RS08230 WP_168958950.1 1985296..1985721(+) (pilA2) [Xanthomonas hortorum pv. pelargonii strain 22-324]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLAQVTAANSGYAFPGATK
YVSGIAITSATGQVAVTSTVPNATGTILLTPTDVGGGQLKWTCSSAINVKYLPAECRNSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=725913 NYR98_RS08230 WP_168958950.1 1985296..1985721(+) (pilA2) [Xanthomonas hortorum pv. pelargonii strain 22-324]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGCGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAGCTTGCGGTAA
CTGAGACTTCATCGTCGCTCGGCGGCCTCGCTCAGGTTACTGCGGCAAATTCGGGCTACGCATTCCCGGGTGCCACGAAG
TATGTCAGCGGCATCGCCATCACCAGTGCTACGGGCCAAGTCGCTGTAACCTCCACCGTGCCGAACGCAACCGGTACCAT
CCTGCTGACCCCGACTGATGTCGGTGGTGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCAACGTCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CDJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

52.941

96.454

0.511
  pilA2 Legionella pneumophila strain ERS1305867

52.941

96.454

0.511
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.216

100

0.475
  pilA Ralstonia pseudosolanacearum GMI1000

39.634

100

0.461
  comP Acinetobacter baylyi ADP1

43.537

100

0.454
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.754

97.872

0.418
  pilE Neisseria gonorrhoeae strain FA1090

37.342

100

0.418
  pilA/pilA1 Eikenella corrodens VA1

39.333

100

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.606

97.163

0.404
  pilE Neisseria gonorrhoeae MS11

35.625

100

0.404
  pilA Pseudomonas aeruginosa PAK

35.065

100

0.383
  pilA Acinetobacter baumannii strain A118

36.111

100

0.369