Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR98_RS08225 Genome accession   NZ_CP103842
Coordinates   1983685..1984944 (-) Length   419 a.a.
NCBI ID   WP_168958949.1    Uniprot ID   A0A6V7CDL9
Organism   Xanthomonas hortorum pv. pelargonii strain 22-324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978685..1989944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR98_RS08195 (NYR98_08205) - 1978911..1980245 (+) 1335 WP_323709601.1 HAMP domain-containing sensor histidine kinase -
  NYR98_RS08200 (NYR98_08210) - 1980394..1980885 (-) 492 WP_168958945.1 GNAT family N-acetyltransferase -
  NYR98_RS08205 (NYR98_08215) - 1980882..1981172 (-) 291 WP_168958946.1 DUF1778 domain-containing protein -
  NYR98_RS08210 (NYR98_08220) - 1981248..1981649 (-) 402 WP_168958947.1 SymE family type I addiction module toxin -
  NYR98_RS08215 (NYR98_08225) coaE 1982178..1982801 (-) 624 WP_168958948.1 dephospho-CoA kinase -
  NYR98_RS08220 (NYR98_08230) - 1982815..1983678 (-) 864 WP_016849610.1 A24 family peptidase -
  NYR98_RS08225 (NYR98_08235) pilC 1983685..1984944 (-) 1260 WP_168958949.1 type II secretion system F family protein Machinery gene
  NYR98_RS08230 (NYR98_08240) pilA2 1985296..1985721 (+) 426 WP_168958950.1 pilin Machinery gene
  NYR98_RS08235 (NYR98_08245) - 1985857..1987446 (+) 1590 WP_168958951.1 phosphoethanolamine transferase -
  NYR98_RS08240 (NYR98_08250) - 1987517..1988086 (+) 570 WP_233366553.1 hypothetical protein -
  NYR98_RS08245 - 1988056..1989592 (+) 1537 Protein_1616 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46016.54 Da        Isoelectric Point: 10.2301

>NTDB_id=725912 NYR98_RS08225 WP_168958949.1 1983685..1984944(-) (pilC) [Xanthomonas hortorum pv. pelargonii strain 22-324]
MSVARSAIKKQPVDRNTGMLQTFIWEGADKRGVKMKGEQPARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRIQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=725912 NYR98_RS08225 WP_168958949.1 1983685..1984944(-) (pilC) [Xanthomonas hortorum pv. pelargonii strain 22-324]
ATGTCAGTCGCGCGTAGCGCAATCAAGAAGCAACCGGTCGACCGGAACACAGGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGCCAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTCAGCCGTCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATCGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTTCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATACAGCATGGACTCGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACAACTGCAG
TGACATTCAAAGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAACAATGCCGTGGATGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CDL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.111

96.659

0.494
  pilC Acinetobacter baumannii D1279779

50.864

96.659

0.492
  pilG Neisseria gonorrhoeae MS11

43.609

95.227

0.415
  pilG Neisseria meningitidis 44/76-A

43

95.465

0.411
  pilC Vibrio cholerae strain A1552

40.75

95.465

0.389
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375
  pilC Thermus thermophilus HB27

38

95.465

0.363