Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   GYH29_RS01820 Genome accession   NZ_AP019312
Coordinates   399131..399571 (+) Length   146 a.a.
NCBI ID   WP_043592285.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394131..404571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS01800 (CH06BL_03510) proB 394226..395344 (-) 1119 WP_043592290.1 glutamate 5-kinase -
  GYH29_RS01805 (CH06BL_03520) - 395544..397046 (-) 1503 WP_141113105.1 hypothetical protein -
  GYH29_RS01810 (CH06BL_03530) - 397148..398500 (-) 1353 WP_161523098.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  GYH29_RS01815 (CH06BL_03540) pilA2 398696..399118 (+) 423 WP_043592286.1 pilin Machinery gene
  GYH29_RS01820 pilA2 399131..399571 (+) 441 WP_043592285.1 pilin Machinery gene
  GYH29_RS01825 (CH06BL_03550) - 399631..401433 (+) 1803 WP_081950357.1 PglL family O-oligosaccharyltransferase -
  GYH29_RS01830 (CH06BL_03560) - 401509..403293 (+) 1785 WP_161523099.1 PglL family O-oligosaccharyltransferase -
  GYH29_RS01835 (CH06BL_03570) rpoH 403369..404232 (-) 864 WP_161523100.1 RNA polymerase sigma factor RpoH -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14927.98 Da        Isoelectric Point: 8.4553

>NTDB_id=72372 GYH29_RS01820 WP_043592285.1 399131..399571(+) (pilA2) [Chromobacterium haemolyticum strain CH06-BL]
MQKTQQGFTLIELMIVVAIIGILAAIAIPAYQDYTARAKVTEGMNAAGAAKTAVSEYAISQGALPSSLASAGVSSASSTY
VTQTLISASGVISIQMRNINTDVNGNYFSLVPTLSSGTVTWACRAGDGSGSGSNAIPTKYLPANCR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=72372 GYH29_RS01820 WP_043592285.1 399131..399571(+) (pilA2) [Chromobacterium haemolyticum strain CH06-BL]
ATGCAAAAAACTCAACAAGGCTTTACTCTCATCGAATTGATGATTGTCGTCGCTATTATTGGTATTTTAGCGGCAATTGC
TATCCCTGCCTATCAGGACTATACGGCAAGAGCTAAAGTAACCGAAGGAATGAACGCGGCCGGTGCGGCAAAAACCGCCG
TTTCAGAATATGCGATTAGTCAGGGGGCGCTACCAAGTAGTTTGGCATCTGCAGGAGTCTCTTCTGCGAGCTCAACTTAT
GTTACACAAACACTGATCTCTGCGAGTGGTGTGATCTCGATTCAGATGAGAAATATTAATACAGATGTTAATGGGAACTA
TTTCTCCTTGGTTCCGACGCTTTCTTCTGGTACGGTAACTTGGGCATGCCGAGCTGGTGATGGCTCTGGGTCAGGCTCGA
ATGCTATCCCCACGAAATATTTGCCTGCTAACTGTCGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(36-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

52.778

98.63

0.521
  pilA2 Legionella pneumophila strain ERS1305867

52.778

98.63

0.521
  pilE Neisseria gonorrhoeae strain FA1090

46.541

100

0.507
  comP Acinetobacter baylyi ADP1

46.104

100

0.486
  pilA Ralstonia pseudosolanacearum GMI1000

41.071

100

0.473
  pilE Neisseria gonorrhoeae MS11

42.5

100

0.466
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.106

100

0.452
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.06

100

0.425
  pilA Vibrio campbellii strain DS40M4

40.523

100

0.425
  pilA/pilA1 Eikenella corrodens VA1

38.854

100

0.418
  pilA Acinetobacter baumannii strain A118

39.31

99.315

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.241

99.315

0.37

Multiple sequence alignment