Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SA231_RS07770 Genome accession   NZ_AP024203
Coordinates   1563891..1564973 (+) Length   360 a.a.
NCBI ID   WP_001622509.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558891..1569973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA231_RS07750 (SA231_14930) - 1559260..1560330 (-) 1071 WP_000460988.1 GGDEF domain-containing protein -
  SA231_RS07755 (SA231_14940) - 1560648..1561703 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  SA231_RS07760 (SA231_14950) - 1561875..1562516 (-) 642 WP_000192949.1 YigZ family protein -
  SA231_RS07765 (SA231_14960) fakB1 1562660..1563526 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  SA231_RS07770 (SA231_14970) comFA 1563891..1564973 (+) 1083 WP_001622509.1 DEAD/DEAH box helicase Machinery gene
  SA231_RS07775 (SA231_14980) - 1564966..1565640 (+) 675 WP_001057970.1 ComF family protein -
  SA231_RS07780 (SA231_14990) raiA 1565701..1566273 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  SA231_RS07785 (SA231_15000) secA 1566688..1569219 (+) 2532 WP_000506533.1 preprotein translocase subunit SecA -
  SA231_RS07790 - 1569261..1569354 (+) 94 Protein_1522 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41991.47 Da        Isoelectric Point: 9.5935

>NTDB_id=71827 SA231_RS07770 WP_001622509.1 1563891..1564973(+) (comFA) [Staphylococcus aureus strain SA23-1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=71827 SA231_RS07770 WP_001622509.1 1563891..1564973(+) (comFA) [Staphylococcus aureus strain SA23-1]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367

Multiple sequence alignment