Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   NQZ90_RS00710 Genome accession   NZ_CP102148
Coordinates   115763..116713 (+) Length   316 a.a.
NCBI ID   WP_203200325.1    Uniprot ID   A0AAW9DEH7
Organism   Streptococcus suis strain DNC15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 110763..121713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00695 (NQZ90_00695) - 112848..114104 (-) 1257 WP_172063023.1 ISL3 family transposase -
  NQZ90_RS00700 (NQZ90_00700) - 114327..114692 (+) 366 WP_014637310.1 DUF1033 family protein -
  NQZ90_RS00705 (NQZ90_00705) - 114727..115677 (-) 951 WP_014637311.1 S66 peptidase family protein -
  NQZ90_RS00710 (NQZ90_00710) comYA 115763..116713 (+) 951 WP_203200325.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ90_RS00715 (NQZ90_00715) comYB 116625..117662 (+) 1038 WP_257110428.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ90_RS00720 (NQZ90_00720) comYC 117664..117945 (+) 282 WP_141599722.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ90_RS00725 (NQZ90_00725) comGD 117926..118333 (+) 408 WP_141599724.1 competence type IV pilus minor pilin ComGD -
  NQZ90_RS00730 (NQZ90_00730) comYE 118305..118598 (+) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ90_RS00735 (NQZ90_00735) comGF/cglF 118585..119019 (+) 435 WP_141599726.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ90_RS00740 (NQZ90_00740) comGG 118997..119407 (+) 411 WP_024415503.1 competence type IV pilus minor pilin ComGG -
  NQZ90_RS00745 (NQZ90_00745) comYH 119464..120417 (+) 954 WP_141599728.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ90_RS00750 (NQZ90_00750) - 120467..121654 (+) 1188 WP_013730078.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35447.28 Da        Isoelectric Point: 5.6977

>NTDB_id=714983 NQZ90_RS00710 WP_203200325.1 115763..116713(+) (comYA) [Streptococcus suis strain DNC15]
MIQEKARKLIEEAVADRVSDIYLVPRGQDYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADRWNAQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=714983 NQZ90_RS00710 WP_203200325.1 115763..116713(+) (comYA) [Streptococcus suis strain DNC15]
ATGATTCAAGAAAAAGCAAGAAAGTTGATTGAAGAGGCGGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGTGG
TCAGGACTACCAAGTCTACCATCGCATCATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGATTAAATGTTGGTGAAAAACGCCGTAGTCAGCAGGGTTCCTGTGATTATGAT
TATGGCAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGTAAGGAAAGTCTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTTAAGTTCTGGTTTGAGGCGGCCGAGCGACTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACGCTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACTATCGAGGATCCTGTCGAGATCAAGCAGGAGGATATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGCCATCGGCCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACGG
CGCGGGCGGTCATCAGGGCCAGCCTGACGGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCAGGTGTCTAT
GCTCGTATGTTGGAATTGGGGGTCAGCCCTGAAGAGTTAAATAATGCCCTTCAAGGCATTGCCTATCAACGCTTGATTGG
GGGAGGAGGTGTAGTGGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCGGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.273

98.418

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.161

98.101

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

53.628

100

0.538
  comGA Latilactobacillus sakei subsp. sakei 23K

41.516

87.658

0.364