Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NQZ90_RS00715 Genome accession   NZ_CP102148
Coordinates   116625..117662 (+) Length   345 a.a.
NCBI ID   WP_257110428.1    Uniprot ID   A0AAW9DE84
Organism   Streptococcus suis strain DNC15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111625..122662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00695 (NQZ90_00695) - 112848..114104 (-) 1257 WP_172063023.1 ISL3 family transposase -
  NQZ90_RS00700 (NQZ90_00700) - 114327..114692 (+) 366 WP_014637310.1 DUF1033 family protein -
  NQZ90_RS00705 (NQZ90_00705) - 114727..115677 (-) 951 WP_014637311.1 S66 peptidase family protein -
  NQZ90_RS00710 (NQZ90_00710) comYA 115763..116713 (+) 951 WP_203200325.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ90_RS00715 (NQZ90_00715) comYB 116625..117662 (+) 1038 WP_257110428.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ90_RS00720 (NQZ90_00720) comYC 117664..117945 (+) 282 WP_141599722.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ90_RS00725 (NQZ90_00725) comGD 117926..118333 (+) 408 WP_141599724.1 competence type IV pilus minor pilin ComGD -
  NQZ90_RS00730 (NQZ90_00730) comYE 118305..118598 (+) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ90_RS00735 (NQZ90_00735) comGF/cglF 118585..119019 (+) 435 WP_141599726.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ90_RS00740 (NQZ90_00740) comGG 118997..119407 (+) 411 WP_024415503.1 competence type IV pilus minor pilin ComGG -
  NQZ90_RS00745 (NQZ90_00745) comYH 119464..120417 (+) 954 WP_141599728.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ90_RS00750 (NQZ90_00750) - 120467..121654 (+) 1188 WP_013730078.1 acetate kinase -
  NQZ90_RS00755 (NQZ90_00755) - 121968..122519 (+) 552 WP_257110272.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38996.98 Da        Isoelectric Point: 9.1440

>NTDB_id=714984 NQZ90_RS00715 WP_257110428.1 116625..117662(+) (comYB) [Streptococcus suis strain DNC15]
MRKLIAFLQQDISVFGRQKQKKLPLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIRVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=714984 NQZ90_RS00715 WP_257110428.1 116625..117662(+) (comYB) [Streptococcus suis strain DNC15]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATTTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTCAGTTTGAG
CCATATCCAGTCCTATTTGGAAAATGTCAGCAAGGTTCGTAAAAAATTGATTGAGGTGGCGACCTATCCGATTATTTTAC
TAGGGTTTCTGCTCTTGATTATGCTGGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCGTG
CTGATCAATCATCTACCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTCTTGTTTGGTT
TCGCAAAACTAACAAAATCAGGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGTTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCGGGAGATTGGGCAGGATCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
CAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATCGTCGAATATGGTCAGGTCAAGTCCAAGTTGGGAAGCGAGT
TGACAGTCTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTGCTTATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

61.194

97.101

0.594
  comGB/cglB Streptococcus mitis SK321

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.184

99.42

0.588
  comYB Streptococcus mutans UA159

59.184

99.42

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae D39

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae R6

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

60.299

97.101

0.586
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493