Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   NQZ91_RS07955 Genome accession   NZ_CP102145
Coordinates   1586947..1587897 (+) Length   316 a.a.
NCBI ID   WP_105110735.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581947..1592897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07940 (NQZ91_07940) ltrA 1584188..1585465 (+) 1278 Protein_1551 group II intron reverse transcriptase/maturase -
  NQZ91_RS07945 (NQZ91_07945) comX/sigX 1585899..1586369 (+) 471 WP_105110737.1 transcriptional regulator Regulator
  NQZ91_RS07950 (NQZ91_07950) - 1586500..1586853 (+) 354 WP_105110736.1 DUF1033 family protein -
  NQZ91_RS07955 (NQZ91_07955) comYA 1586947..1587897 (+) 951 WP_105110735.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ91_RS07960 (NQZ91_07960) comYB 1587809..1588846 (+) 1038 WP_172068135.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ91_RS07965 (NQZ91_07965) comYC 1588847..1589146 (+) 300 WP_170243122.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ91_RS07970 (NQZ91_07970) comGD/cglD 1589109..1589534 (+) 426 WP_257104952.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ91_RS07975 (NQZ91_07975) comYE 1589506..1589799 (+) 294 WP_105122988.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ91_RS07980 (NQZ91_07980) comYF 1589762..1590220 (+) 459 WP_398599394.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ91_RS07985 (NQZ91_07985) comGG 1590198..1590800 (+) 603 WP_257117307.1 competence type IV pilus minor pilin ComGG -
  NQZ91_RS07990 (NQZ91_07990) comYH 1590851..1591804 (+) 954 WP_105122991.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35424.39 Da        Isoelectric Point: 5.4799

>NTDB_id=714951 NQZ91_RS07955 WP_105110735.1 1586947..1587897(+) (comYA) [Streptococcus suis strain DNS20]
MIQEKAKQMIEEAVTGRVSDIYLVPKGETYQLYHRIMDEREFVRELEETEVDALIGHFKFLAGLNVGEKRRSQQGSCDYD
YGKGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFQAVEEIAKEIKGRGLYLFSGPVGSGKTTLMYHLARMKFPDKQ
ILTIEDPVEIKQDDMLQLQLNETIGATYDNLIKLSLRHRPDLLIIGEIRDAETARSVIRASLTGATVFSTVHAKSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAREDFQNHSADKWNAQIDSLLAAGHISPRQAEAEKIILGASA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=714951 NQZ91_RS07955 WP_105110735.1 1586947..1587897(+) (comYA) [Streptococcus suis strain DNS20]
ATGATTCAAGAAAAAGCAAAACAAATGATAGAGGAGGCGGTAACCGGTCGAGTCAGTGACATTTATCTGGTTCCCAAAGG
TGAGACCTATCAGCTCTATCATCGTATCATGGACGAACGGGAATTTGTCCGAGAGCTGGAGGAAACGGAAGTAGATGCTC
TGATTGGGCATTTCAAGTTTCTAGCTGGTCTCAATGTCGGTGAGAAGCGCCGTAGTCAGCAGGGGTCCTGCGATTATGAT
TATGGCAAGGGCGAGATTTCTCTGCGCCTGTCAACGGTCGGGGATTATCGTGGCAAGGAAAGTTTGGTCATTCGTCTGCT
CTATGATAATGACAAGGAGTTGAAATTCTGGTTTCAGGCCGTAGAGGAAATTGCCAAGGAAATCAAAGGTCGGGGACTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGCAAGACCACGCTTATGTACCATTTAGCCAGGATGAAATTCCCAGACAAGCAA
ATTCTGACCATCGAAGATCCGGTGGAAATCAAGCAGGACGATATGTTGCAACTTCAGCTCAATGAAACTATTGGCGCGAC
TTATGACAATCTCATCAAACTGTCCCTGCGCCATCGTCCTGACCTGCTCATCATCGGGGAAATCCGTGATGCAGAGACAG
CTCGATCAGTTATTAGGGCTAGTTTGACCGGAGCGACAGTCTTTTCGACGGTGCATGCCAAGTCCATTTCGGGTGTCTAT
GCTCGGATGTTGGAATTGGGTGTTAGTCCAGAAGAGCTCAATAATGCCCTACAAGGCATTGCCTACCAGCGCTTGATAGG
GGGAGGAGGTGTTGTTGATTTTGCCAGAGAAGATTTCCAAAACCATTCCGCAGACAAGTGGAATGCACAGATTGATAGCC
TTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCGGAGGCCGAAAAAATTATCCTTGGAGCGTCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

66.452

98.101

0.652
  comGA/cglA/cilD Streptococcus pneumoniae D39

66.452

98.101

0.652
  comGA/cglA/cilD Streptococcus pneumoniae R6

66.452

98.101

0.652
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

66.452

98.101

0.652
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

66.129

98.101

0.649
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.806

98.101

0.646
  comGA Lactococcus lactis subsp. cremoris KW2

52.997

100

0.532