Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   NQZ91_RS07975 Genome accession   NZ_CP102145
Coordinates   1589506..1589799 (+) Length   97 a.a.
NCBI ID   WP_105122988.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584506..1594799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07945 (NQZ91_07945) comX/sigX 1585899..1586369 (+) 471 WP_105110737.1 transcriptional regulator Regulator
  NQZ91_RS07950 (NQZ91_07950) - 1586500..1586853 (+) 354 WP_105110736.1 DUF1033 family protein -
  NQZ91_RS07955 (NQZ91_07955) comYA 1586947..1587897 (+) 951 WP_105110735.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ91_RS07960 (NQZ91_07960) comYB 1587809..1588846 (+) 1038 WP_172068135.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ91_RS07965 (NQZ91_07965) comYC 1588847..1589146 (+) 300 WP_170243122.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ91_RS07970 (NQZ91_07970) comGD/cglD 1589109..1589534 (+) 426 WP_257104952.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ91_RS07975 (NQZ91_07975) comYE 1589506..1589799 (+) 294 WP_105122988.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ91_RS07980 (NQZ91_07980) comYF 1589762..1590220 (+) 459 WP_398599394.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ91_RS07985 (NQZ91_07985) comGG 1590198..1590800 (+) 603 WP_257117307.1 competence type IV pilus minor pilin ComGG -
  NQZ91_RS07990 (NQZ91_07990) comYH 1590851..1591804 (+) 954 WP_105122991.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ91_RS07995 (NQZ91_07995) - 1591854..1593041 (+) 1188 WP_257117308.1 acetate kinase -
  NQZ91_RS08000 (NQZ91_08000) - 1593356..1593907 (+) 552 WP_125065555.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10841.64 Da        Isoelectric Point: 10.2225

>NTDB_id=714955 NQZ91_RS07975 WP_105122988.1 1589506..1589799(+) (comYE) [Streptococcus suis strain DNS20]
MVVIRNRKNKAYILLEGLVALSVLVTITSLFLSAMEVSRRQQAEGLYQQEVLNVAKMAVQTGQDNLSLNGVKVTVQRSDK
LLAVYHEGREVARVEKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=714955 NQZ91_RS07975 WP_105122988.1 1589506..1589799(+) (comYE) [Streptococcus suis strain DNS20]
GTGGTCGTTATAAGAAATCGGAAAAATAAGGCCTATATCTTGCTGGAGGGGCTGGTGGCCTTGTCGGTTCTAGTCACTAT
TACCAGCCTCTTTCTTTCTGCCATGGAGGTCAGTCGCAGGCAACAGGCGGAGGGCTTGTATCAACAGGAGGTCCTCAATG
TTGCCAAGATGGCGGTGCAGACGGGTCAGGATAATCTGTCGCTCAATGGTGTCAAGGTGACGGTCCAGCGGTCGGACAAG
CTTTTGGCTGTCTATCATGAGGGAAGAGAGGTGGCGCGTGTTGAGAAAAACTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

50

98.969

0.495
  comYE Streptococcus mutans UA159

50

98.969

0.495
  comGE/cglE Streptococcus pneumoniae Rx1

46.988

85.567

0.402
  comGE/cglE Streptococcus pneumoniae D39

46.988

85.567

0.402
  comGE/cglE Streptococcus pneumoniae R6

46.988

85.567

0.402
  comGE/cglE Streptococcus pneumoniae TIGR4

46.988

85.567

0.402
  comGE/cglE Streptococcus mitis NCTC 12261

44.578

85.567

0.381
  comGE/cglE Streptococcus mitis SK321

44.578

85.567

0.381