Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NQZ91_RS07960 Genome accession   NZ_CP102145
Coordinates   1587809..1588846 (+) Length   345 a.a.
NCBI ID   WP_172068135.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582809..1593846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07940 (NQZ91_07940) ltrA 1584188..1585465 (+) 1278 Protein_1551 group II intron reverse transcriptase/maturase -
  NQZ91_RS07945 (NQZ91_07945) comX/sigX 1585899..1586369 (+) 471 WP_105110737.1 transcriptional regulator Regulator
  NQZ91_RS07950 (NQZ91_07950) - 1586500..1586853 (+) 354 WP_105110736.1 DUF1033 family protein -
  NQZ91_RS07955 (NQZ91_07955) comYA 1586947..1587897 (+) 951 WP_105110735.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ91_RS07960 (NQZ91_07960) comYB 1587809..1588846 (+) 1038 WP_172068135.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ91_RS07965 (NQZ91_07965) comYC 1588847..1589146 (+) 300 WP_170243122.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ91_RS07970 (NQZ91_07970) comGD/cglD 1589109..1589534 (+) 426 WP_257104952.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ91_RS07975 (NQZ91_07975) comYE 1589506..1589799 (+) 294 WP_105122988.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ91_RS07980 (NQZ91_07980) comYF 1589762..1590220 (+) 459 WP_398599394.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ91_RS07985 (NQZ91_07985) comGG 1590198..1590800 (+) 603 WP_257117307.1 competence type IV pilus minor pilin ComGG -
  NQZ91_RS07990 (NQZ91_07990) comYH 1590851..1591804 (+) 954 WP_105122991.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ91_RS07995 (NQZ91_07995) - 1591854..1593041 (+) 1188 WP_257117308.1 acetate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39301.21 Da        Isoelectric Point: 8.2293

>NTDB_id=714952 NQZ91_RS07960 WP_172068135.1 1587809..1588846(+) (comYB) [Streptococcus suis strain DNS20]
MHRLIAFLQQDISVLGRRRPKKLSLERQRKVIELFNNLFASGFHLGEIVDFLRRSQLLADQYTQILSDGLVAGKPFSSLL
ADLAFSDTVVTQVSLAEIHGNTSLSLQHIETYLSNLSKVRKKLIEVATYPVILLGFLVLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLGLVLTILLCTLAGYIWYRRTAKITVFSCLSALPFFGKLIQTYLTAYYAREWGSLIGQGLDMQQVVRLMQE
QQSQLFVEIGRDMEEALGNGQSFDQHIRSYPFFKRELSLIVEYGQVKSKLGSELAVYANECWEEFFSRVNRAMQLIQPLV
FLFVALVVVLIYAAMLLPIYQNMEM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=714952 NQZ91_RS07960 WP_172068135.1 1587809..1588846(+) (comYB) [Streptococcus suis strain DNS20]
ATGCACAGATTGATAGCCTTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCGGAGGCCGAAAAAATTATCCTTGGAGCG
TCAGCGTAAAGTCATCGAGCTTTTTAACAATCTCTTTGCCAGTGGCTTTCACTTGGGAGAGATTGTTGATTTTCTCAGGC
GCAGTCAGCTCTTGGCAGACCAATATACGCAAATCCTATCAGACGGTCTGGTAGCGGGGAAGCCTTTTTCGAGCCTCTTA
GCTGATTTGGCCTTTTCCGACACAGTTGTCACTCAGGTGTCATTGGCAGAAATTCATGGCAATACCAGTCTCAGTCTGCA
ACACATCGAGACCTATCTGAGTAACTTATCCAAAGTACGGAAAAAATTGATTGAGGTAGCGACCTATCCCGTTATTCTAT
TAGGATTTTTGGTGTTGATTATGCTGGGTCTGAAAAACTATCTCCTGCCACAGTTGGAGGAGGGCAATGCCGCGACCATG
CTCATCAACCATTTACCGACCATCTTTCTCGGGTTGGTTTTAACCATCTTGCTCTGCACTTTAGCAGGCTACATCTGGTA
CCGCAGGACGGCTAAAATCACTGTCTTTAGTTGTCTGTCCGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CCGCCTACTACGCGCGGGAGTGGGGTAGCCTCATCGGGCAAGGACTGGATATGCAGCAGGTGGTGCGGCTGATGCAGGAG
CAGCAGTCCCAGCTCTTTGTCGAGATTGGGCGAGATATGGAGGAGGCTTTGGGCAATGGGCAGAGCTTTGACCAGCATAT
CCGTTCCTATCCATTTTTCAAGAGGGAACTGAGTTTGATTGTGGAGTACGGGCAAGTCAAGTCCAAGTTGGGTAGCGAGC
TTGCCGTCTATGCCAATGAGTGCTGGGAGGAATTCTTCTCTCGCGTTAATCGTGCCATGCAGCTCATTCAACCGCTGGTC
TTTCTCTTTGTCGCTCTCGTTGTTGTTCTTATCTACGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

64.035

99.13

0.635
  comYB Streptococcus mutans UA140

59.357

99.13

0.588
  comYB Streptococcus mutans UA159

59.357

99.13

0.588
  comGB/cglB Streptococcus mitis NCTC 12261

60.597

97.101

0.588
  comGB/cglB Streptococcus mitis SK321

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae D39

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae R6

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae TIGR4

59.403

97.101

0.577
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493