Detailed information NTG0070329

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VCASEI_RS10880
• Genome accession: NZ_AP018680
• Coordinates: 2320947..2324336 (+)
• Length: 1129 a.a.
• NCBI ID: WP_086961850.1
• Uniprot ID: -
• Organism: Vibrio casei strain DSM 22364
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2315947..2329336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCASEI_RS10860	erpA	2316065..2316406 (-)	342	WP_086961842.1	iron-sulfur cluster insertion protein ErpA	-
VCASEI_RS10865	hemL	2316830..2318122 (+)	1293	WP_086961844.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VCASEI_RS10870	-	2318428..2319513 (+)	1086	WP_086961846.1	AI-2E family transporter	-
VCASEI_RS10875	rsmC	2319602..2320630 (+)	1029	WP_086961848.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VCASEI_RS10880	chiS	2320947..2324336 (+)	3390	WP_086961850.1	response regulator	Regulator
VCASEI_RS10885	-	2325139..2326821 (+)	1683	WP_086961852.1	ABC transporter substrate-binding protein	-
VCASEI_RS10890	-	2326988..2327974 (+)	987	WP_086961854.1	ABC transporter permease	-
VCASEI_RS10895	-	2327977..2329002 (+)	1026	WP_086961856.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127423.71 Da
• Isoelectric Point: 7.0692

>NTDB_id=70329 VCASEI_RS10880 WP_086961850.1 2320947..2324336(+) (chiS) [Vibrio casei strain DSM 22364]
MLKARKIKKLQRLQHTLMAAFLVVSLTPLIIIAAFFLHSHSQDLQEQSTSYLTSVRDTKKQQISDYLKSKESEVMGMVRS
ELAYSSGGRFYGLISAFSRLGNTIEDARKNAQQRYILGSGDQIKTSVLPESEDYIGTERYRLLHKRYHWAYVDLLKRSDF
TDVLLVDLEGNVAYSVKKDDHFGTNLINGKYKNFTLGKTFARLQKAVKESRKKNEDYTPVIFSDFDIENGQQVLWVGAPI
IQQGYLHSYAMFKLPNTALTHTINDHHDKSNITKILVGSDHIPRIQGITKEQIESSTSVINKALSGETAVGSFSNIHGEK
VIAAYTPIKIKNKSWALIVELPEKDAYSRIDQLKHIFFIVMLIGIVGVFICAHYLSNFITAPLLKLAWAAERVSAGDLDQ
NIVSIERKDEIGRLAASFTRMQRSIREKIQLIGDQNKKLEENIQTIRQQNNELQLANKLKDEFLATTSHELRTPLHGMVG
IAESLISGSNGTVPNNQKHQLSIIINSGQRLATLVDDLLDYHKMRYGNLDIQKTTVDIAAATRLVLELSNHLIGSKPLRI
INQIPLELPLVYADAQRLEQVLYNLVGNAIKYTSEGKVIISATVLDKKIRIQVVDTGQGIPAAQLDHIFEPLIQASQDSS
RYRQGAGLGLSISRQLIELMGGTLYVSSQPFVGTTFSFSLPIATQEELNAHKIDIPEIHFQVPESASFVNEQDSILPNNP
NGPLLVVADDEPVNLQILDSFLRLEGYRVRTTTDGLTAIQLIEKEKPELVLLDVMMPAMSGYEACQEIRKHYDHATLPVI
LLTALSQTNDRIRGFDAGANDYLTKPFNKQELAARIRAHLTASKAEIRRLENAQLQQELKIREQVEASLLETQGRLLEQL
ESAPEAIICVREDGRIRFANDSAAKLFKRSPEQLKRSNADEIIAPKYLNIIQEHYCGEVDIFIDDKREHVSTDVLSLPDA
SGLKSMYIFNVGGGINAQRIDNLETAIEALSSYAFDGDKNKLQQLKELGGEFTRLADKVSPKSEDKQHIMREVLVDTMIT
ALDYWESETGKTKFALAEESGLWRVYLDRSTLQTRTLDKYLRIETLPKTARWRTVLNTIDYILEHTKDQTEQRQHLINCR
EKLQNLLIN

Nucleotide

• Length: 3390 bp

>NTDB_id=70329 VCASEI_RS10880 WP_086961850.1 2320947..2324336(+) (chiS) [Vibrio casei strain DSM 22364]
ATGCTAAAGGCTCGTAAAATAAAGAAATTACAAAGACTTCAACATACGTTGATGGCTGCATTTTTGGTGGTAAGCCTGAC
TCCCTTAATCATTATTGCTGCCTTTTTTTTGCATTCGCATAGCCAAGATTTACAAGAGCAAAGCACCTCTTATCTAACCT
CTGTTCGCGACACAAAAAAACAACAAATTAGCGATTATTTGAAATCGAAAGAATCTGAAGTCATGGGAATGGTTAGGTCT
GAACTCGCCTACTCTAGCGGTGGACGTTTCTATGGTTTAATCAGTGCTTTTTCAAGGTTAGGCAACACCATTGAAGATGC
AAGAAAAAATGCCCAACAACGATACATATTAGGATCGGGTGATCAAATTAAGACATCGGTCTTACCCGAATCTGAAGATT
ATATCGGAACAGAGCGTTATCGATTGCTTCACAAACGATACCATTGGGCTTATGTCGATTTATTGAAACGTTCCGACTTT
ACGGATGTTCTCCTCGTTGATCTAGAAGGCAATGTGGCCTACTCAGTCAAAAAGGATGATCACTTCGGAACCAACCTGAT
AAATGGTAAATATAAAAATTTCACCTTGGGAAAAACGTTTGCTAGATTACAAAAAGCAGTCAAAGAATCTCGTAAAAAGA
ATGAAGATTACACCCCCGTTATTTTTTCCGATTTTGATATAGAAAATGGTCAACAAGTGCTTTGGGTTGGCGCGCCAATC
ATTCAACAAGGTTACTTACACAGTTACGCCATGTTCAAATTACCCAATACAGCATTAACTCACACTATTAACGACCATCA
TGATAAAAGTAACATCACTAAAATATTAGTGGGCTCCGATCATATACCGAGAATACAAGGCATCACTAAAGAACAAATTG
AATCGAGTACGTCAGTGATAAACAAAGCCTTATCTGGTGAGACGGCTGTCGGTTCATTTAGTAACATCCATGGTGAGAAA
GTCATTGCTGCATACACTCCAATCAAGATAAAAAATAAAAGCTGGGCATTAATTGTTGAACTCCCAGAAAAAGATGCCTA
CTCTCGCATCGACCAACTGAAGCACATCTTTTTTATTGTGATGTTAATTGGCATTGTCGGGGTTTTCATTTGTGCCCACT
ACTTATCCAATTTTATAACGGCACCTCTACTTAAACTCGCTTGGGCTGCTGAACGAGTATCCGCCGGTGATCTCGATCAA
AATATAGTCAGTATTGAGCGTAAAGATGAAATTGGTCGGTTAGCCGCAAGCTTTACTCGTATGCAGCGTTCAATACGAGA
AAAAATTCAGCTGATTGGCGATCAAAACAAAAAACTTGAAGAGAACATTCAAACTATTCGTCAGCAAAATAATGAACTTC
AACTTGCTAATAAGTTAAAAGATGAATTTCTTGCCACCACCTCACATGAATTACGCACCCCTTTACATGGTATGGTGGGA
ATTGCAGAATCTTTAATATCAGGTTCAAATGGAACGGTTCCCAACAATCAAAAGCATCAACTGTCTATTATTATTAATAG
CGGACAACGTTTAGCCACATTGGTTGATGACTTACTCGATTATCATAAAATGCGCTATGGCAATTTAGACATCCAAAAAA
CAACCGTTGATATTGCTGCCGCGACCCGATTAGTTCTTGAATTATCTAACCATCTAATCGGCAGTAAGCCACTAAGAATT
ATCAATCAGATCCCATTAGAATTGCCACTTGTTTATGCTGATGCCCAGCGTTTAGAGCAAGTACTTTATAATTTAGTGGG
CAATGCCATTAAATACACATCGGAAGGTAAAGTCATTATATCCGCCACGGTACTTGATAAGAAAATTCGCATACAAGTAG
TCGATACGGGCCAAGGCATACCAGCCGCTCAACTGGATCATATTTTTGAACCTCTCATTCAAGCCAGTCAAGATTCATCT
CGTTATCGTCAAGGGGCAGGTTTAGGGCTTTCAATTAGCCGTCAACTTATTGAGCTAATGGGAGGCACCTTATACGTTAG
CAGCCAACCTTTTGTCGGCACCACATTCAGTTTTTCTCTGCCAATCGCAACACAAGAAGAGCTTAATGCCCATAAAATAG
ACATACCAGAAATTCACTTCCAAGTTCCTGAGAGCGCCTCATTTGTAAATGAACAAGACTCTATACTACCGAATAACCCT
AACGGGCCACTCTTAGTTGTGGCAGACGATGAACCCGTTAACTTGCAAATCCTTGATAGTTTTTTACGATTGGAGGGGTA
TCGGGTCCGTACTACAACCGATGGCTTAACGGCCATTCAACTTATCGAAAAAGAGAAGCCCGAACTCGTTTTACTCGATG
TAATGATGCCAGCCATGAGCGGTTATGAAGCTTGCCAAGAAATTCGCAAACATTATGATCATGCCACATTGCCCGTTATT
TTGCTAACCGCACTAAGCCAAACCAATGACCGAATTCGTGGCTTTGATGCGGGTGCCAATGACTACCTCACCAAGCCATT
TAACAAACAAGAGCTTGCGGCTCGCATTAGAGCGCACTTAACCGCGAGCAAAGCTGAGATAAGACGACTTGAAAATGCGC
AATTGCAACAAGAACTAAAAATAAGAGAACAAGTGGAAGCCAGTTTATTAGAAACTCAAGGTCGTCTTCTCGAGCAACTT
GAATCAGCACCAGAAGCGATTATTTGTGTTAGAGAAGATGGTCGAATTCGCTTTGCCAATGACTCTGCTGCAAAACTTTT
TAAACGCAGCCCCGAACAATTAAAACGATCTAATGCAGATGAAATTATTGCCCCTAAATATCTCAACATTATCCAAGAAC
ATTATTGCGGTGAGGTCGATATTTTTATCGATGATAAACGTGAACATGTTAGTACTGACGTACTTAGCCTACCGGATGCT
TCTGGGCTAAAATCCATGTACATTTTCAACGTCGGTGGCGGAATCAATGCACAACGGATAGACAACCTCGAAACCGCGAT
TGAAGCATTGTCCAGTTATGCCTTTGACGGAGATAAAAATAAGCTTCAGCAGCTAAAAGAGTTAGGTGGAGAGTTTACAC
GCCTAGCAGATAAAGTTTCCCCTAAGAGCGAAGACAAACAGCATATTATGCGTGAAGTATTGGTCGATACCATGATTACC
GCGCTCGACTATTGGGAGTCTGAAACGGGAAAAACCAAATTCGCACTCGCAGAGGAAAGTGGTTTATGGCGAGTATACTT
AGACAGAAGCACCCTTCAAACAAGAACATTAGATAAGTATCTACGTATTGAAACATTACCCAAAACGGCTCGGTGGCGAA
CTGTGTTAAACACAATAGACTACATTTTAGAACATACTAAAGATCAAACAGAGCAACGACAGCACCTAATAAATTGCAGA
GAAAAGCTACAAAACCTACTCATAAATTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS fold (PAS) (877-918)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• Response regulator receiver domain (Response_reg) (726-837)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	68.44	99.911	0.684