Detailed information NTG0070332

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VCASEI_RS11100
• Genome accession: NZ_AP018680
• Coordinates: 2380999..2382231 (+)
• Length: 410 a.a.
• NCBI ID: WP_089110775.1
• Uniprot ID: -
• Organism: Vibrio casei strain DSM 22364
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2375999..2387231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCASEI_RS11080	ampD	2376770..2377336 (-)	567	WP_086961922.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
VCASEI_RS11085	nadC	2377534..2378454 (+)	921	WP_086961924.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VCASEI_RS19775	-	2378789..2379223 (+)	435	WP_086961926.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
VCASEI_RS11095	pilB	2379232..2380920 (+)	1689	WP_086961927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VCASEI_RS11100	pilC	2380999..2382231 (+)	1233	WP_089110775.1	type II secretion system F family protein	Machinery gene
VCASEI_RS11105	pilD	2382274..2383167 (+)	894	WP_086961931.1	A24 family peptidase	Machinery gene
VCASEI_RS11110	coaE	2383179..2383796 (+)	618	WP_086961933.1	dephospho-CoA kinase	-
VCASEI_RS11115	zapD	2383837..2384574 (+)	738	WP_086961935.1	cell division protein ZapD	-
VCASEI_RS11120	yacG	2384672..2384875 (+)	204	WP_086961936.1	DNA gyrase inhibitor YacG	-
VCASEI_RS11125	mutT	2384945..2385346 (-)	402	WP_086961938.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45619.96 Da
• Isoelectric Point: 10.2034

>NTDB_id=70332 VCASEI_RS11100 WP_089110775.1 2380999..2382231(+) (pilC) [Vibrio casei strain DSM 22364]
MATTSTLKAPALKNFQWRGINNSGKKVSGQILAINESEVRNKLKEQRVQIKKLKRRSVSIFAKMSHKVKRKDITILTRQL
ATMLTTGVPIVQSFKLISDSQRKAEMKSILSQICTQVEAGTPISKALHASSPFFDDFFCDLVATGEQTGNLAEVFERLAT
YREKSEELRSKVIKAMIYPAMVISVATIVSILMLTMVIPEFETMFSSMGAELPWFTQQVVNLSHFIQSYLFMMMAAIFIL
IFCIKEARKRSFSFRLKTSRMALNMPVLGGVFTKAAIAKFSRTLATSFNAGIPILTSLLTTAKTSGNLHYQVAIEQVHKD
TAAGMPMYIAMRNADAFPEMVLQMVMIGEESGNLDDMLNKVAAIYEFEVDNTVDNLGKIIEPVIIVFLGVVVGGLVVSLY
LPIFKMASVF

Nucleotide

• Length: 1233 bp

>NTDB_id=70332 VCASEI_RS11100 WP_089110775.1 2380999..2382231(+) (pilC) [Vibrio casei strain DSM 22364]
ATGGCTACCACATCGACACTTAAAGCGCCGGCGCTCAAAAACTTTCAATGGCGAGGTATTAATAACTCTGGCAAAAAAGT
GTCAGGGCAAATATTGGCGATTAATGAGAGTGAAGTGCGCAACAAGCTGAAAGAGCAGCGCGTACAAATCAAAAAACTCA
AACGTCGCAGCGTGTCGATTTTTGCCAAAATGAGCCATAAAGTAAAACGTAAAGACATCACGATATTAACCAGACAACTC
GCCACCATGTTGACCACGGGCGTACCCATTGTTCAATCATTCAAACTCATTTCCGACAGTCAACGTAAAGCGGAAATGAA
ATCCATTTTGTCTCAAATTTGTACCCAAGTAGAAGCCGGAACCCCCATTTCCAAAGCCTTGCATGCTAGCAGCCCTTTTT
TTGATGACTTCTTTTGTGACTTAGTCGCGACAGGTGAGCAAACGGGCAACTTAGCCGAAGTATTTGAACGCTTAGCCACC
TATCGAGAAAAAAGTGAAGAGCTGCGGTCTAAAGTGATTAAAGCCATGATATACCCCGCGATGGTTATATCGGTCGCGAC
AATAGTATCAATACTCATGCTCACCATGGTGATCCCAGAGTTTGAAACCATGTTTAGCAGCATGGGCGCAGAACTGCCTT
GGTTTACTCAACAGGTCGTTAATCTATCTCATTTTATCCAAAGTTACTTATTCATGATGATGGCAGCCATCTTTATATTG
ATTTTTTGTATTAAAGAAGCCCGTAAACGATCGTTTTCTTTTCGCTTAAAAACCAGTCGAATGGCATTGAATATGCCCGT
CCTTGGAGGGGTGTTTACCAAAGCGGCCATTGCAAAGTTCAGCCGAACTCTTGCCACCAGCTTTAATGCAGGCATTCCAA
TTTTAACCAGTTTATTAACCACGGCAAAAACCTCGGGCAACTTACATTATCAAGTCGCTATCGAGCAAGTCCATAAAGAT
ACTGCGGCTGGAATGCCTATGTACATCGCCATGCGCAATGCCGATGCGTTTCCTGAAATGGTACTGCAAATGGTGATGAT
TGGTGAAGAATCTGGCAATTTGGATGATATGCTCAACAAAGTAGCGGCAATTTATGAGTTCGAAGTCGACAATACTGTCG
ATAATTTAGGTAAAATCATTGAGCCTGTTATCATTGTCTTTCTTGGTGTTGTTGTCGGGGGGCTCGTGGTGTCTCTTTAC
CTTCCCATCTTTAAGATGGCTAGTGTATTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (280-402)

• Type II secretion system (T2SS), protein F (T2SSF) (77-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Vibrio cholerae strain A1552	70.488	100	0.705
pilC	Vibrio campbellii strain DS40M4	66.169	98.049	0.649
pilC	Acinetobacter baumannii D1279779	44.169	98.293	0.434
pilC	Acinetobacter baylyi ADP1	43.182	96.585	0.417
pilC	Pseudomonas stutzeri DSM 10701	40.399	97.805	0.395
pilG	Neisseria gonorrhoeae MS11	39.216	99.512	0.39
pilG	Neisseria meningitidis 44/76-A	38.971	99.512	0.388
pilC	Legionella pneumophila strain ERS1305867	39	97.561	0.38