Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VCASEI_RS09720 Genome accession   NZ_AP018680
Coordinates   2063144..2064115 (-) Length   323 a.a.
NCBI ID   WP_086959512.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058144..2069115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS09710 - 2058377..2060266 (+) 1890 WP_089111245.1 TRAP transporter fused permease subunit -
  VCASEI_RS09715 mutS 2060475..2063027 (+) 2553 WP_086959534.1 DNA mismatch repair protein MutS -
  VCASEI_RS09720 rpoS 2063144..2064115 (-) 972 WP_086959512.1 RNA polymerase sigma factor RpoS Regulator
  VCASEI_RS09725 - 2064185..2065009 (-) 825 WP_086959510.1 peptidoglycan DD-metalloendopeptidase family protein -
  VCASEI_RS09730 - 2065027..2065653 (-) 627 WP_086959508.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VCASEI_RS09735 surE 2065691..2066431 (-) 741 WP_086959506.1 5'/3'-nucleotidase SurE -
  VCASEI_RS09740 truD 2066522..2067577 (-) 1056 WP_086959504.1 tRNA pseudouridine(13) synthase TruD -
  VCASEI_RS09745 ispF 2067607..2068083 (-) 477 WP_086959501.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VCASEI_RS09750 ispD 2068109..2068852 (-) 744 WP_086959499.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 37069.01 Da        Isoelectric Point: 4.6273

>NTDB_id=70327 VCASEI_RS09720 WP_086959512.1 2063144..2064115(-) (rpoS) [Vibrio casei strain DSM 22364]
MSISNAVIKTTNIDDNEFDVETVEAASVSQKDEVKEEYEVSAKSLDATQLYLSEIGFSPLLTAEEEVLYARRALRGDIAA
RKRMIESNLRLVVKISRRYNSRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH
VVKELNIYLRTARELAQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPEFST
QDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILTKQGLNMESLFNA
DYE

Nucleotide


Download         Length: 972 bp        

>NTDB_id=70327 VCASEI_RS09720 WP_086959512.1 2063144..2064115(-) (rpoS) [Vibrio casei strain DSM 22364]
ATGAGTATCAGCAATGCAGTAATCAAAACGACCAACATTGATGATAATGAATTTGATGTTGAAACGGTTGAAGCCGCTTC
GGTTTCACAAAAAGATGAAGTAAAAGAAGAGTACGAAGTATCGGCGAAAAGCCTTGATGCGACTCAGCTTTACTTAAGTG
AAATTGGCTTTTCACCACTCCTTACCGCTGAAGAAGAAGTCCTTTATGCTCGCCGTGCATTGCGTGGTGATATCGCCGCC
CGTAAGCGAATGATTGAAAGTAACTTACGCCTTGTTGTTAAGATCTCTCGCCGTTATAACAGCCGTGGTTTAGCACTACT
TGACCTTATTGAAGAAGGTAACTTAGGCTTGATTCGTGCGGTTGAAAAGTTTGACCCAGAACGTGGGTTCCGCTTTTCAA
CTTACGCAACGTGGTGGATCAGACAAACCATTGAACGCGCCTTAATGAATCAAACCCGCACCATTAGGTTGCCTATTCAT
GTGGTGAAAGAGCTAAACATTTATCTTCGAACGGCTCGTGAGTTAGCTCAAAAGCTGGATCATGAACCCACAGCAGAAGA
AATCGCCTTTCAGCTAGATAAGCCAGTGGAAGATGTCAGCAAAATGCTGCGTCTTAATGAACGAGTGAGTTCAGTCGACA
CACCTATTGGGGGCGATGGTGAAAAGGCTTTATTAGATATTATTCCCGACATTAACAATTCGGATCCTGAGTTTTCAACT
CAAGATGATGACATTAAGTCGTCTTTGATTGATTGGCTTGATGAATTAAATCCGAAACAAAAAGAAGTTCTTGCTCGACG
CTTCGGTCTTTTAGGCTATGAGCCATCCACTTTAGAAGAAGTTGGTCGTGAAATTAATTTAACTCGTGAGCGTGTTCGTC
AAATTCAAGTTGAAGGGCTGCGTCGTTTAAGAGAGATCTTAACGAAGCAAGGTTTGAATATGGAATCTTTGTTTAACGCT
GATTACGAATAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(164-237)

Sigma-70 region 2 (Sigma70_r2)

(84-153)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(46-77)

Sigma-70, region 4 (Sigma70_r4)

(252-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.838

100

0.836

Multiple sequence alignment