Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   VCASEI_RS11055 Genome accession   NZ_AP018680
Coordinates   2368477..2369085 (+) Length   202 a.a.
NCBI ID   WP_086961912.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2363477..2374085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS11030 panC 2364092..2364970 (+) 879 WP_089110777.1 pantoate--beta-alanine ligase -
  VCASEI_RS11035 - 2365077..2365847 (-) 771 WP_086961905.1 ABC transporter permease -
  VCASEI_RS11040 - 2365847..2366785 (-) 939 WP_086961906.1 ABC transporter ATP-binding protein -
  VCASEI_RS11045 can 2366883..2367554 (+) 672 WP_086961908.1 carbonate dehydratase -
  VCASEI_RS11050 hpt 2367709..2368239 (-) 531 WP_086961910.1 hypoxanthine phosphoribosyltransferase -
  VCASEI_RS11055 hapR 2368477..2369085 (+) 609 WP_086961912.1 TetR/AcrR family transcriptional regulator Regulator
  VCASEI_RS11060 lpdA 2369204..2370631 (-) 1428 WP_086961914.1 dihydrolipoyl dehydrogenase -
  VCASEI_RS11065 aceF 2370905..2372815 (-) 1911 WP_089110776.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23489.80 Da        Isoelectric Point: 5.6667

>NTDB_id=70330 VCASEI_RS11055 WP_086961912.1 2368477..2369085(+) (hapR) [Vibrio casei strain DSM 22364]
MDMVTKRPRTRLNPEKRKLQLLEIGIEVFARRGIGRGGHADIADIAQVSVATAFNYFPTREDLVDDVLNQVEQNFSAFLQ
ESIDPSLPVKTNLSEISNRLIDIVLKEEQWIKIWFEWSTSTREEVWPLFVATHGQHQKYFRELFLNAIENGELCKDHNPG
NIAKLFHGICYSIYVQANRRPDKEYLTQLADSFLDMLCIYKE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=70330 VCASEI_RS11055 WP_086961912.1 2368477..2369085(+) (hapR) [Vibrio casei strain DSM 22364]
ATGGATATGGTAACAAAACGTCCAAGGACACGGTTAAATCCAGAAAAAAGAAAACTACAATTACTTGAAATCGGCATCGA
AGTCTTTGCGCGTCGAGGAATTGGTCGTGGGGGTCATGCCGACATCGCTGATATTGCCCAGGTATCGGTTGCTACCGCTT
TCAACTATTTCCCTACCCGTGAAGATTTAGTCGATGACGTTTTAAATCAAGTTGAACAAAACTTCTCTGCTTTTTTGCAA
GAAAGCATTGATCCATCACTACCAGTAAAGACTAACTTAAGTGAAATTTCTAATCGTTTAATTGATATTGTTTTAAAAGA
AGAGCAATGGATTAAAATATGGTTTGAATGGAGCACATCAACTCGTGAAGAAGTATGGCCTTTATTCGTTGCTACTCATG
GCCAGCATCAAAAATATTTTCGTGAGCTATTTTTGAATGCGATTGAAAATGGTGAGTTATGTAAAGATCACAATCCCGGT
AATATCGCCAAACTGTTTCATGGTATTTGTTACTCTATTTATGTTCAAGCCAATCGTCGTCCAGATAAAGAGTACCTCAC
TCAATTAGCAGATAGTTTCTTAGATATGTTGTGCATTTATAAAGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

61.111

98.02

0.599
  hapR Vibrio cholerae strain A1552

61.111

98.02

0.599
  opaR Vibrio parahaemolyticus RIMD 2210633

59.5

99.01

0.589

Multiple sequence alignment