Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | NGM67_RS15570 | Genome accession | NZ_CP099545 |
| Coordinates | 2343441..2343701 (-) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae strain XP-11 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2338441..2348701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGM67_RS15545 (NGM67_15545) | yfbR | 2339683..2340267 (+) | 585 | WP_068947009.1 | 5'-deoxynucleotidase | - |
| NGM67_RS15550 (NGM67_15550) | - | 2340267..2341595 (+) | 1329 | WP_068947008.1 | anti-phage deoxyguanosine triphosphatase | - |
| NGM67_RS15555 (NGM67_15555) | - | 2341747..2342364 (-) | 618 | WP_068947007.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| NGM67_RS15560 (NGM67_15560) | rrtA | 2342374..2342931 (+) | 558 | WP_252689874.1 | rhombosortase | - |
| NGM67_RS15565 (NGM67_15565) | - | 2343018..2343356 (+) | 339 | WP_252689875.1 | DUF1971 domain-containing protein | - |
| NGM67_RS15570 (NGM67_15570) | comEA | 2343441..2343701 (-) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| NGM67_RS15575 (NGM67_15575) | ppiD | 2343891..2345789 (-) | 1899 | WP_106339073.1 | peptidylprolyl isomerase | - |
| NGM67_RS15580 (NGM67_15580) | hupB | 2346140..2346412 (-) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=700566 NGM67_RS15570 WP_370466065.1 2343441..2343701(-) (comEA) [Photobacterium damselae strain XP-11]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=700566 NGM67_RS15570 WP_370466065.1 2343441..2343701(-) (comEA) [Photobacterium damselae strain XP-11]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATCCAATACC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATCCAATACC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |