Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   NDK37_RS17465 Genome accession   NZ_CP098489
Coordinates   4012455..4012862 (-) Length   135 a.a.
NCBI ID   WP_016849608.1    Uniprot ID   -
Organism   Xanthomonas citri pv. glycines strain T8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4007455..4017862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK37_RS17455 (NDK37_17465) pilR 4008283..4009737 (+) 1455 WP_016850709.1 sigma-54 dependent transcriptional regulator Regulator
  NDK37_RS17460 (NDK37_17470) pilB 4010584..4012320 (-) 1737 WP_029828360.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDK37_RS17465 (NDK37_17475) pilA/pilAI 4012455..4012862 (-) 408 WP_016849608.1 pilin Machinery gene
  NDK37_RS17470 (NDK37_17480) pilC 4013221..4014474 (+) 1254 WP_026006934.1 type II secretion system F family protein Machinery gene
  NDK37_RS17475 (NDK37_17485) - 4014481..4015344 (+) 864 WP_016849610.1 A24 family peptidase -
  NDK37_RS17480 (NDK37_17490) coaE 4015358..4015969 (+) 612 WP_016849611.1 dephospho-CoA kinase -
  NDK37_RS17485 (NDK37_17495) - 4016364..4016630 (+) 267 WP_154666337.1 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 13974.02 Da        Isoelectric Point: 8.4717

>NTDB_id=696246 NDK37_RS17465 WP_016849608.1 4012455..4012862(-) (pilA/pilAI) [Xanthomonas citri pv. glycines strain T8]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTAAADAGYIGVGGTTS
YCTVTVTATTIVCATRGGNATKFNGKNLTWTRDAATGLWSCSSDLDAKYKPGKCT

Nucleotide


Download         Length: 408 bp        

>NTDB_id=696246 NDK37_RS17465 WP_016849608.1 4012455..4012862(-) (pilA/pilAI) [Xanthomonas citri pv. glycines strain T8]
ATGAAAAAGCAGCAAGGTTTTACGCTGATCGAACTGATGATCGTTGTTGCGATCATCGCCATTCTGGCCGCCATCGCGCT
GCCGGCCTATCAGGACTATGTGGTGAAGTCGCAGGCCGCATCTGCCCTTGCTGAAATCACTCCCGGAAAGGTTGGCTTCG
AGCAGGCAACCAACGAAGGTAAGACCCCTAGCACCGCCGCTGCTGACGCAGGCTACATCGGCGTGGGTGGTACTACCTCG
TATTGCACCGTGACGGTCACTGCCACCACCATCGTTTGCGCCACCCGTGGTGGAAACGCGACGAAGTTCAATGGCAAGAA
CTTGACCTGGACCCGCGACGCCGCGACTGGTCTGTGGAGCTGCTCGTCTGATCTGGACGCGAAGTACAAGCCGGGTAAGT
GCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

68.148

100

0.681
  pilA/pilAII Pseudomonas stutzeri DSM 10701

62.406

98.519

0.615
  pilA Pseudomonas aeruginosa PAK

44.667

100

0.496
  pilA Acinetobacter baumannii strain A118

44.056

100

0.467
  pilA Vibrio parahaemolyticus RIMD 2210633

44.697

97.778

0.437
  comP Acinetobacter baylyi ADP1

40.136

100

0.437
  pilA Ralstonia pseudosolanacearum GMI1000

35.443

100

0.415
  pilA Vibrio cholerae strain A1552

38.732

100

0.407
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.732

100

0.407
  pilA Vibrio cholerae C6706

38.732

100

0.407
  pilA2 Legionella pneumophila str. Paris

37.956

100

0.385
  pilA2 Legionella pneumophila strain ERS1305867

37.956

100

0.385