Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDK37_RS17470 Genome accession   NZ_CP098489
Coordinates   4013221..4014474 (+) Length   417 a.a.
NCBI ID   WP_026006934.1    Uniprot ID   A0AAX0I5G1
Organism   Xanthomonas citri pv. glycines strain T8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008221..4019474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK37_RS17455 (NDK37_17465) pilR 4008283..4009737 (+) 1455 WP_016850709.1 sigma-54 dependent transcriptional regulator Regulator
  NDK37_RS17460 (NDK37_17470) pilB 4010584..4012320 (-) 1737 WP_029828360.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDK37_RS17465 (NDK37_17475) pilA/pilAI 4012455..4012862 (-) 408 WP_016849608.1 pilin Machinery gene
  NDK37_RS17470 (NDK37_17480) pilC 4013221..4014474 (+) 1254 WP_026006934.1 type II secretion system F family protein Machinery gene
  NDK37_RS17475 (NDK37_17485) - 4014481..4015344 (+) 864 WP_016849610.1 A24 family peptidase -
  NDK37_RS17480 (NDK37_17490) coaE 4015358..4015969 (+) 612 WP_016849611.1 dephospho-CoA kinase -
  NDK37_RS17485 (NDK37_17495) - 4016364..4016630 (+) 267 WP_154666337.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45101.21 Da        Isoelectric Point: 10.1912

>NTDB_id=696247 NDK37_RS17470 WP_026006934.1 4013221..4014474(+) (pilC) [Xanthomonas citri pv. glycines strain T8]
MSTAPSASKNRPAPATQLSPFVWEGKDKRGATMKGEQTARNANLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAKDIA
FFSRQMATMMKSGVPIVGALEIIGEGQKNPRMRTMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVSASRFMVSWWWALL
LLIVGAIGGMIFAYKRSPAMQHSLDRLVLKVPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGSSVYEAAV
LRMRDDVSVGYPVNVAMKQVGLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGG
MVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=696247 NDK37_RS17470 WP_026006934.1 4013221..4014474(+) (pilC) [Xanthomonas citri pv. glycines strain T8]
ATGTCAACAGCACCTAGCGCTTCAAAAAATAGACCAGCACCCGCAACTCAATTGAGCCCGTTTGTCTGGGAGGGGAAAGA
CAAGCGCGGCGCAACAATGAAGGGAGAGCAGACAGCGCGCAACGCCAACCTACTGCGTGCCGAATTACGTAGGCAGGGGA
TCACACCCACTGTGGTGAAACCCAAGCCGAAACCTCTTTTTGGCGCAGCGGGCAAGAAGGTTACCGCCAAAGACATTGCT
TTCTTTAGCCGGCAGATGGCAACGATGATGAAATCTGGCGTGCCAATCGTCGGCGCCTTGGAAATCATCGGCGAAGGACA
AAAAAACCCTCGCATGCGCACGATGGTCGGTCAAGTCCGCACTGACATTGAAGGCGGATCTTCGTTGTACGAGGCGATCA
GCAAGCATCCTGTGCAGTTTGACGAGTTGTACCGGAACTTGGTCCGAGCAGGTGAAGGCGCTGGCGTGCTTGAAACGGTG
CTGGACACCATCGCCAGTTACAAGGAAAACATCGAGGCGCTCAAGGGCAAAATCAAAAAGGCACTATTCTACCCCGCCAT
GGTAATGGCTGTAGCTCTTCTGGTTAGTTCTATCCTTCTGATCTGGGTTGTTCCGCAATTTGAAGACGTTTTCAAAGGAT
TTGGTGCCGAACTCCCCGCTTTCACTCAAATGATCGTCAGCGCGTCGCGCTTCATGGTCTCATGGTGGTGGGCACTGTTA
CTCCTAATCGTCGGAGCGATCGGAGGAATGATATTTGCCTATAAACGCTCTCCGGCGATGCAACACAGCTTGGATCGACT
TGTATTGAAGGTTCCGGTCATTGGGCAGATCATGCATAACAGTTCTGTCGCCAGGTTTGCCCGAACAACAGCAGTTACCT
TTAAGGCAGGTGTCCCTCTGGTAGAGGCACTGAGTATTGTTGCGGGCGCCACTGGGAGCTCGGTCTACGAGGCAGCAGTG
CTTCGTATGCGAGACGATGTTTCGGTCGGATATCCAGTAAACGTAGCGATGAAGCAAGTTGGCCTCTTCCCGCACATGGT
GGTGCAAATGACCGCTATCGGTGAAGAAGCAGGCGCGCTCGACACCATGCTTTTCAAGGTCGCGGAGTACTTCGAGCAGG
AAGTTAACAACGCAGTCGACGCTCTAAGCAGTCTCTTAGAGCCACTGATCATGGTGTTCATTGGTACCATCGTCGGCGGC
ATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.234

96.403

0.513
  pilC Legionella pneumophila strain ERS1305867

50.847

99.041

0.504
  pilC Acinetobacter baylyi ADP1

51.478

97.362

0.501
  pilC Acinetobacter baumannii D1279779

49.132

96.643

0.475
  pilG Neisseria gonorrhoeae MS11

42.25

95.923

0.405
  pilG Neisseria meningitidis 44/76-A

41.75

95.923

0.4
  pilC Vibrio cholerae strain A1552

40.887

97.362

0.398
  pilC Vibrio campbellii strain DS40M4

40.099

96.882

0.388
  pilC Thermus thermophilus HB27

39.461

97.842

0.386