Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   NDN11_RS04590 Genome accession   NZ_CP098478
Coordinates   980361..981479 (-) Length   372 a.a.
NCBI ID   WP_004805191.1    Uniprot ID   A0A829HBG9
Organism   Acinetobacter sp. C26M     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975361..986479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS04560 (NDN11_04560) - 976026..976874 (+) 849 WP_167248028.1 class II glutamine amidotransferase -
  NDN11_RS04565 (NDN11_04565) - 977158..977613 (+) 456 WP_004655155.1 bacteriohemerythrin -
  NDN11_RS04570 (NDN11_04570) - 977858..978940 (+) 1083 WP_251110890.1 hypothetical protein -
  NDN11_RS04575 (NDN11_04575) - 978940..979254 (+) 315 WP_167248030.1 RnfH family protein -
  NDN11_RS04580 (NDN11_04580) bamE 979317..979715 (-) 399 WP_004805189.1 outer membrane protein assembly factor BamE -
  NDN11_RS04585 (NDN11_04585) fur 979827..980264 (+) 438 WP_005150955.1 ferric iron uptake transcriptional regulator -
  NDN11_RS04590 (NDN11_04590) pilU 980361..981479 (-) 1119 WP_004805191.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NDN11_RS04595 (NDN11_04595) pilT 981504..982541 (-) 1038 WP_004655144.1 type IV pilus twitching motility protein PilT Machinery gene
  NDN11_RS04600 (NDN11_04600) - 982667..983353 (+) 687 WP_251110891.1 YggS family pyridoxal phosphate-dependent enzyme -
  NDN11_RS04605 (NDN11_04605) - 983562..984281 (+) 720 WP_251111489.1 hypothetical protein -
  NDN11_RS04610 (NDN11_04610) - 984342..985010 (-) 669 WP_251110892.1 HAD-IA family hydrolase -
  NDN11_RS04615 (NDN11_04615) - 985082..985354 (-) 273 WP_251111490.1 hypothetical protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 41722.91 Da        Isoelectric Point: 6.3492

>NTDB_id=696068 NDN11_RS04590 WP_004805191.1 980361..981479(-) (pilU) [Acinetobacter sp. C26M]
MDFNDLLNLMIQQNASDLFVTADVEPSMKINGQIVPVSKSKLSGEIVGQLVQSIMTDKQRKEFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRKIETHIPSMDDLKLPEVLKELAMTKRGIIIFVGATGTGKSTSLASMIGFRNQNSKGHIITIE
DPIEFVHQHAGCIVTQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVLATLHANNANQALDR
IIHFFEADRHSQLYMDLSLNLKALVAQQLIPTPDGNSRRAAIEILINTPLLADYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLSEEGADQLLSASRNITFDGQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=696068 NDN11_RS04590 WP_004805191.1 980361..981479(-) (pilU) [Acinetobacter sp. C26M]
ATGGATTTTAATGATTTACTCAATTTGATGATTCAACAAAATGCATCGGACTTATTTGTCACCGCAGATGTTGAACCTTC
AATGAAAATTAACGGGCAGATCGTGCCTGTCTCTAAATCGAAACTTTCAGGGGAAATTGTGGGTCAACTGGTTCAATCCA
TTATGACCGACAAACAGCGGAAAGAATTTGCAGAGACCCGTGAATGTAACTTCGCGATCATGAACCGTGAAAAGACGGCG
CGTTTCCGTGTCAGTGCTTTTCAACAACGTGATATGCCAGGTATGGTACTGCGTAAGATTGAAACGCATATTCCAAGCAT
GGACGACTTGAAACTACCTGAAGTGCTGAAAGAATTGGCGATGACCAAACGTGGCATCATTATCTTTGTTGGTGCAACAG
GGACAGGTAAATCGACCTCTTTAGCGTCAATGATTGGTTTCCGTAACCAAAATTCCAAAGGTCATATCATCACCATTGAA
GACCCAATCGAATTTGTGCATCAACATGCAGGCTGTATCGTGACGCAGCGCGAAGTTGGGATTGATACCGATTCATTTGA
AATTGCGCTAAAGAATACCCTACGTCAGGCGCCAGATGTGATCTTGATTGGTGAGATTCGTTCGCGTGAAACCATGGACT
ATGCCATCGCTTTCGCAGAAACAGGTCACTTGGTACTCGCTACCCTGCATGCCAACAACGCCAACCAAGCCCTCGATCGT
ATCATTCACTTCTTTGAAGCAGACCGTCATAGTCAATTGTATATGGACTTGTCGCTGAACTTAAAAGCACTCGTCGCACA
GCAATTGATTCCAACACCAGATGGTAATTCACGTCGTGCTGCGATTGAGATTTTGATCAATACTCCACTTCTGGCTGACT
ATATCCGAAAGGGTGAAATTCACGAGATCAAAGATCTGATGAAACGTTCACGTGAGTTGGGTATGCAAACCTTTGACCAA
GCGTTATTTGATCTTTATAAAGCTGGGCAAATTACCTATAAAGATGCATTAAAGCATGCGGATTCGCCAAACGACTTACG
CCTCACCATCAAACTTTCCGAAGAAGGTGCAGACCAGTTACTGAGTGCCAGCCGAAATATTACCTTTGATGGCCAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829HBG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

76.72

100

0.78
  pilU Pseudomonas stutzeri DSM 10701

70.081

99.731

0.699
  pilU Vibrio cholerae strain A1552

53.784

99.462

0.535
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.618

93.011

0.387
  pilT Legionella pneumophila strain Lp02

41.071

90.323

0.371
  pilT Legionella pneumophila strain ERS1305867

41.071

90.323

0.371
  pilT Neisseria gonorrhoeae MS11

40

91.398

0.366
  pilT Neisseria meningitidis 8013

40

91.398

0.366
  pilT Pseudomonas aeruginosa PAK

39.306

93.011

0.366
  pilT Pseudomonas stutzeri DSM 10701

39.017

93.011

0.363
  pilT Acinetobacter baumannii strain A118

39.067

92.204

0.36
  pilT Acinetobacter baumannii D1279779

39.067

92.204

0.36
  pilT Acinetobacter nosocomialis M2

39.067

92.204

0.36